Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagggtactcatattctctcaaggattcaagtttatacagaattgtcttcgtaaatttggcgtcgatttgacctaactctggttggagggttttacgtagGACTGTTAGTGGTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAG

Basic information

species Physcomitrella patens
transcript PP1S487_18V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386634|gb|BY970175.1|BY970175
EST:     GGTTTTGGTTGAGTGTGAGATTTTGTGGGAATTTGTTTGATTGCTCTTGG                         GACTGTTAGTGGTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTA
genomic: GGTTTTGGTTGAGTGTGAGATTTTGTGGGAATTTGTTTGATTGCTCTTGGgtgagttttt ... ttttacgtagGACTGTTAGTGGTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcgtaaatttggcgtcgatttgacctaactctggttggagggttttacgtagGACTGTTAGTGGTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAG
                         acctaac  putative branch site (score: 2)
      taaattt  TA-rich tract