1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattaacttttgtctacctcaggttttattttatttcattttatttcttgtggatgattgaattactgtatttgaaaactggcagtataaattcgttcccaaacattgttcttgtaggtccttaacgttgaattgttggagtcttggtttatgaggattagggtttacgggctgtgtgttttgccagGAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAGGCAGGGTGTGTTTAGGCGGTTTTTCTGCAGAATTTGACTTTCTGATAGG
species | Physcomitrella patens |
transcript | PP1S47_94V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGTCTTCTGGTTGGGATTCGCAGGTTTAGGGTACCTGTTCTCAGAG GAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAGEST: gi|18348554|gb|BJ180603.1|BJ180603
genomic: GGTTCGTCTTCTGGTTGGGATTCGCAGGTTTAGGGTACCTGTTCTCAGAGgtattaactt ... gttttgccagGAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAG
EST: GGTTCGTCTTCTGGTTGGGATTCGCAGGTTTAGGGTACCTGTTCTCAGAG GAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAG
genomic: GGTTCGTCTTCTGGTTGGGATTCGCAGGTTTAGGGTACCTGTTCTCAGAGgtattaactt ... gttttgccagGAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAG
ttgttggagtcttggtttatgaggattagggtttacgggctgtgtgttttgccagGAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAGGCAGGGTGTGTTTAGGCGGTTTTTCTGCAGAATTTGACTTTCTGATAGG
ttttgcc CT-rich tract
tttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaacttttgtctacctcaggttttattttatttcattttatttcttgtggatgattgaattactgtatttgaaaactggcagtataaattcgttcccaaacattgttcttgtaggtccttaacgttgaattgttggagtcttggtttatgaggattagggtttacgggctgtgtgttttgccagGAGTTTTGATTTTCGATGGGGATTGGTGACGATTCTCGGAGGGAAGGGCAGGCAGGGTGTGTTTAGGCGGTTTTTCTGCAGAATTTGACTTTCTGATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG