1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcactgtgcctggagtttgatcaattggactggggaatggggacgtgtgtgcatgcgattatggtgattgggcttgtggttgattgatgtcggttaggatgatcggcgctgatgctgttcgtgtgagtgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGATTTGAAGGCGTTGCAGAGCGTGGGTCAAATCATCGGAGAAGTGTTGAG
species | Physcomitrella patens |
transcript | PP1S47_46V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCTCGATGCAAGGCTGCNAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|18353546|gb|BJ185601.1|BJ185601
genomic: AAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|18330767|gb|BJ162773.1|BJ162773
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|100450689|gb|CJ974389.1|CJ974389
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|18358089|gb|BJ190148.1|BJ190148
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCEST: gi|18353444|gb|BJ185499.1|BJ185499
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGC
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|208398538|gb|DC912383.1|DC912383
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|18357042|gb|BJ189101.1|BJ189101
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|100405000|gb|BY991388.1|BY991388
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|162269527|gb|FC445083.1|FC445083
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGEST: gi|18344191|gb|BJ176230.1|BJ176230
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
EST: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATT TGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
genomic: TAGGCGCAAGCTTTTGCAGCACAAAGAGCTCGATGCAAGGCTGCGAAATTgtgagcactg ... tgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATG
attgatgtcggttaggatgatcggcgctgatgctgttcgtgtgagtgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGATTTGAAGGCGTTGCAGAGCGTGGGTCAAATCATCGGAGAAGTGTTGAG
cgctgat putative branch site (score: 8)
tatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcactgtgcctggagtttgatcaattggactggggaatggggacgtgtgtgcatgcgattatggtgattgggcttgtggttgattgatgtcggttaggatgatcggcgctgatgctgttcgtgtgagtgggtattagTGCGTGAAAATGTGAAGGCTGCGAGGAAAGAGTTTGACAAGACAGAAGATGATTTGAAGGCGTTGCAGAGCGTGGGTCAAATCATCGGAGAAGTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT