1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC
species | Physcomitrella patens |
transcript | PP1S47_277V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|208380153|gb|DC927432.1|DC927432
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67698997|gb|BJ959230.1|BJ959230
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|208396407|gb|DC920073.1|DC920073
genomic: GTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: TCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|162258306|gb|FC434233.1|FC434233
genomic: TCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: CTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|100374751|gb|BY949051.1|BY949051
genomic: CTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|18369192|gb|BJ201277.1|BJ201277
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|37845862|gb|BJ603870.1|BJ603870
genomic: GGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: TGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67717319|gb|BJ967578.1|BJ967578
genomic: TGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|208352405|gb|DC906188.1|DC906188
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: TCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|208349966|gb|DC913674.1|DC913674
genomic: TCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|18353103|gb|BJ185158.1|BJ185158
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|18358961|gb|BJ191021.1|BJ191021
genomic: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|162237414|gb|FC412717.1|FC412717
genomic: GGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: CTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67575789|gb|BJ948613.1|BJ948613
genomic: CTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: AGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|18371408|gb|BJ203010.1|BJ203010
genomic: AGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|18368948|gb|BJ201033.1|BJ201033
genomic: GTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67575451|gb|BJ948275.1|BJ948275
genomic: GTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: C-ACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67725836|gb|BJ976095.1|BJ976095
genomic: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67702984|gb|BJ963217.1|BJ963217
genomic: ATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACAGACATTTCAAEST: gi|18361266|gb|BJ193331.1|BJ193331
genomic: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67698918|gb|BJ959151.1|BJ959151
genomic: GTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: CAA-CTTCCNTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAEST: gi|67695614|gb|BJ955847.1|BJ955847
genomic: CAACCTCCCTTGCTCCATTCGGTGTGTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
EST: GTCTTGTCTCTGGAGCGTCTCGAAG GGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
genomic: GTCTTGTCTCTGGAGCGTCTCGAAGgtgtgcctcg ... caccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAA
tgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC
tgttgat putative branch site (score: 38)
tatactaagttttt TA-rich tract