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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtcctaactttacattataatattgacatcgagtttgagattaaattgtgtctagatttgactttccattgattgacctgattgtgctgtttttacagATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAACAATTACAGAAGACGAG

Basic information

species Physcomitrella patens
transcript PP1S47_242V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18355301|gb|BJ187360.1|BJ187360
EST:     GTCTGGCCAGAAGCGGGATAGTTCGGGTGCTCCTGTGCACGGCGGCCGCG                         ATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAA
genomic: GTCTGGCCAGAAGCGGGATAGTTCGGGTGCTCCTGTGCACGGCGGCCGCGgtgtgtatct ... gtttttacagATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAA
EST: gi|100435385|gb|BY979217.1|BY979217
EST:     GTCTGGCCAGAAGCGGGATAGTTCGGGTGCTCCTGTGCACGGCGGCCGCG                         ATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAA
genomic: GTCTGGCCAGAAGCGGGATAGTTCGGGTGCTCCTGTGCACGGCGGCCGCGgtgtgtatct ... gtttttacagATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtgtctagatttgactttccattgattgacctgattgtgctgtttttacagATCCAACTGATGGTGCTTTTGTGAAACTTTTCGTCGGGTCTGTTCCTCGAACAATTACAGAAGACGAG
                                           ctgttttt  CT-rich tract
                                            tgttttta  TA-rich tract