1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctacacttggacacccaaatctcctcaagtccagagtctgctcatcctgtgatcctcagtctgccttgtgtatctgatccctcacattgttttgagcagAGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTTATCTTACAGCCCAGTTGCGCATTTGTTCTTATTCCTGGTACAATGGACC
species | Physcomitrella patens |
transcript | PP1S47_230V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGAGTCTCTCAAGGTCTTGGAGGCGGACATTCAGCATGCAAACACTTT AGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTTEST: gi|100411813|gb|BY992354.1|BY992354
genomic: AAAGAGTCTCTCAAGGTCTTGGAGGCGGACATTCAGCATGCAAACACTTTgtaagtgcat ... ttttgagcagAGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTT
EST: AAAGAGTCTCTCAAGGTCTTGGAGGCGGACATTCAGCATGCAAACACTTT AGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTT
genomic: AAAGAGTCTCTCAAGGTCTTGGAGGCGGACATTCAGCATGCAAACACTTTgtaagtgcat ... ttttgagcagAGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTT
tcctgtgatcctcagtctgccttgtgtatctgatccctcacattgttttgagcagAGCATCAGACGTCCCAAGAGATTATGATGGGGCGTGCATTCAAATGCGGTTATCTTACAGCCCAGTTGCGCATTTGTTCTTATTCCTGGTACAATGGACC
ccctcac putative branch site (score: 7)
ttgtttt CT-rich tract
attgtttt TA-rich tract