1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgcaatttgtcgcttgtttcacattcctgcatgtggctataccgtctctatgcaaacgtccaggatgcacaattctaattggtgctctcacgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCAAGCAGCTGGTGGACATCCCAGGAGCCGAGTACTTCTCCTTCTTGGGGC
species | Physcomitrella patens |
transcript | PP1S47_210V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162180160|gb|FC355477.1|FC355477
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: GCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162159291|gb|FC334611.1|FC334611
genomic: GCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162188445|gb|FC365043.1|FC365043
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162208211|gb|FC384315.1|FC384315
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: GACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162181104|gb|FC357276.1|FC357276
genomic: GACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162181036|gb|FC358690.1|FC358690
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162150195|gb|FC326072.1|FC326072
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162196476|gb|FC374402.1|FC374402
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162169919|gb|FC345859.1|FC345859
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCEST: gi|162150010|gb|FC326541.1|FC326541
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
EST: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAG GTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
genomic: AGGACATTTTTCGTGGAACCAAGCAATTCAAGGCTGAGGTTTTTGACAAGgtaccggaaa ... acgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATC
tctctatgcaaacgtccaggatgcacaattctaattggtgctctcacgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCAAGCAGCTGGTGGACATCCCAGGAGCCGAGTACTTCTCCTTCTTGGGGC
ctctcac CT-rich tract
aattctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcaatttgtcgcttgtttcacattcctgcatgtggctataccgtctctatgcaaacgtccaggatgcacaattctaattggtgctctcacgaatctagGTGCAATTGGAGCTCAACCAATTCGGTCTTCATATATACAATGCCAACATCAAGCAGCTGGTGGACATCCCAGGAGCCGAGTACTTCTCCTTCTTGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaca