1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgcgctcttttatgattttagtttctgttccacctcgctttgttaacatctgtggtactgaagttttatcttctcatcaatcccatttatctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG
species | Physcomitrella patens |
transcript | PP1S47_1V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAACAACCATT ATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAEST: gi|100395519|gb|BY953724.1|BY953724
genomic: AGAACAACCATTgtgagttgtc ... tctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACA
EST: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACC-TT ATGGTATGGGTACTGCAGAATGGCGGTCAGCCAAEST: gi|208398653|gb|DC920548.1|DC920548
genomic: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACCATTgtgagttgtc ... tctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAA
EST: TGCGAGAACAACCATT ATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAEST: gi|162165202|gb|FC341171.1|FC341171
genomic: TGCGAGAACAACCATTgtgagttgtc ... tctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACA
EST: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACCATT ATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAEST: gi|208359154|gb|DC934657.1|DC934657
genomic: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACCATTgtgagttgtc ... tctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACA
EST: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGANCA-CCATT ATGGTATGGGTACTGCA
genomic: CTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACCATTgtgagttgtc ... tctgtgacagATGGTATGGGTACTGCA
aacatctgtggtactgaagttttatcttctcatcaatcccatttatctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG
tgttaac putative branch site (score: 31)
tttatct putative PPT
aagttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcgctcttttatgattttagtttctgttccacctcgctttgttaacatctgtggtactgaagttttatcttctcatcaatcccatttatctgtgacagATGGTATGGGTACTGCAGAGTGGCGGTCAGCCAAAAGTCCCGAGTATTACAAACGTGGGGACTACATTCCTGGGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG