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gtgtgtgtgtgtgtgtgctttgcctcttttgttacattagtttttatgtgtaggaagtggagttttggggatgggttggtagcgctcggattgtggttggggtgatgcaggtcattttgtaattactttttttgggtgtgagatgtgtttcatttgagtggttgggtgttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGTCGAAGCAGCTAGCCGCACAGCTCATCCCTCGATTTTTCAAGCATTTTC
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|100361575|gb|BY984075.1|BY984075
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|18345792|gb|BJ177835.1|BJ177835
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|18326192|gb|BJ158191.1|BJ158191
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|208383270|gb|DC907244.1|DC907244
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|162177459|gb|FC353720.1|FC353720
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|18325198|gb|BJ157194.1|BJ157194
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|100363091|gb|BY984352.1|BY984352
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|100386966|gb|BY988235.1|BY988235
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|18325679|gb|BJ157676.1|BJ157676
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|18352423|gb|BJ184477.1|BJ184477
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGEST: gi|100359470|gb|BY984270.1|BY984270
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
EST: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAG AATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
genomic: AGCTGTATCGGTTCGGGGAGAGCCTGAACGAGTCCAAGGATAAGTCGAAGgtgtgtgtgt ... ttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAG
tactttttttgggtgtgagatgtgtttcatttgagtggttgggtgttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGTCGAAGCAGCTAGCCGCACAGCTCATCCCTCGATTTTTCAAGCATTTTC
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtgtgtgtgtgctttgcctcttttgttacattagtttttatgtgtaggaagtggagttttggggatgggttggtagcgctcggattgtggttggggtgatgcaggtcattttgtaattactttttttgggtgtgagatgtgtttcatttgagtggttgggtgttgtgagtagAATGAAGCAGATTATCTGGGAATTATTGCTGCGGCGAAAGGAAGCGCGAAGTCGAAGCAGCTAGCCGCACAGCTCATCCCTCGATTTTTCAAGCATTTTC
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