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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagtcgaactttacatgaagcacatgtatctttctctaatagacttgtatcatgggtactaatgaatgacattcgatcgttgggattgcatttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAGAAATACTTGCCGCGTGAGCGTATCGACTACCTTCTTGATCCTGGATCTC

Basic information

species Physcomitrella patens
transcript PP1S47_126V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179961|gb|FC356032.1|FC356032
EST:     AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA                         GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
EST: gi|100370689|gb|BY948467.1|BY948467
EST:     AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA                         GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
EST: gi|208349841|gb|DC905965.1|DC905965
EST:     AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAA                         GTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG
genomic: AGAAGGCGATGGAAGAGCTTCTGCTTGACCTTCAGCAAAAAGTTGAAAAAgtaagacttc ... catttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtatcatgggtactaatgaatgacattcgatcgttgggattgcatttctcagGTACGGCTTGGGGGTGGAGTTAAAGCTGTTGAACGCCACAAGAGTCGTAAGAAATACTTGCCGCGTGAGCGTATCGACTACCTTCTTGATCCTGGATCTC
             tactaat  putative branch site (score: 1)
                                             catttctc  putative PPT
                taatgaat  TA-rich tract