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gtacatgcgtacggtttttggttgtgcattgcagcttcatgtcttggacgaagacgaggtattgagcgaagaattgtgaaatctgagcatggctggaacgcgtgtaacgtttgctgtgaggtggttggggagtgttgtagagagttgtatgaagcagagatgattctaagggttcgaggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCCATGACTTACGCTCAAATCAGGCAGCTTTTGGAGGGCCTAGCAGACCGG
species | Physcomitrella patens |
transcript | PP1S479_14V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|100435994|gb|BY979327.1|BY979327
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|18363694|gb|BJ195766.1|BJ195766
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGANCATGANAAATTTGGGTTTCANCTCGACAACCTGCANCCEST: gi|162186779|gb|FC362815.1|FC362815
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|67716872|gb|BJ967131.1|BJ967131
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|18362968|gb|BJ195040.1|BJ195040
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|100413370|gb|BY956638.1|BY956638
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|67704735|gb|BJ964968.1|BJ964968
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|208384006|gb|DC907397.1|DC907397
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGCACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|67717406|gb|BJ967665.1|BJ967665
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCEST: gi|18324874|gb|BJ156869.1|BJ156869
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
EST: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAG GATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
genomic: GATTTGGTGGGGTACTTGGCGTCTGGGTGCAAACCCAAAGAGAAATGGAGgtacatgcgt ... aggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCC
gtgttgtagagagttgtatgaagcagagatgattctaagggttcgaggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCCATGACTTACGCTCAAATCAGGCAGCTTTTGGAGGGCCTAGCAGACCGG
attctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgcgtacggtttttggttgtgcattgcagcttcatgtcttggacgaagacgaggtattgagcgaagaattgtgaaatctgagcatggctggaacgcgtgtaacgtttgctgtgaggtggttggggagtgttgtagagagttgtatgaagcagagatgattctaagggttcgaggtttgcagGATTGGAACGGAGCATGAGAAATTTGGGTTTCAGCTCGACAACCTGCAGCCCATGACTTACGCTCAAATCAGGCAGCTTTTGGAGGGCCTAGCAGACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG