1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatacatagtatttcacataatcaggtgttgagtagacttttaaagagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
species | Physcomitrella patens |
transcript | PP1S479_10V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCTGAAGCCCTTGGTCAAGTGTTTGTTGTGGAGACGAAGGGCTTAG ATGGATAGAGAGAAGCTAATGAAGAAGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18353886|gb|BJ185941.1|BJ185941
genomic: CGC-TCTGAAGCCCTTGGTCAAGTGTTTGTTGTGGAGACGAAGGGCTTAGgtaatgcgaa ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: ACGCTCTGAAGCCCTTGGTCAAGTGTTTGTTGTGGAGACGAAGGGCTTAG ATGGATAGAGAGAAGCTAATGAAGAAGGCTAGTGCAGTGCGCACTGGTGGG
genomic: ACGCTCTGAAGCCCTTGGTCAAGTGTTTGTTGTGGAGACGAAGGGCTTAGgtaatgcgaa ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
gagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
atttaat putative branch site (score: 78)
atttaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacatagtatttcacataatcaggtgttgagtagacttttaaagagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca