1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatacatagtatttcacataatcaggtgttgagtagacttttaaagagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
species | Physcomitrella patens |
transcript | PP1S479_10V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCNGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162274367|gb|FC450394.1|FC450394
genomic: -GTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162244329|gb|FC421007.1|FC421007
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18342856|gb|BJ174892.1|BJ174892
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18353276|gb|BJ185331.1|BJ185331
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: AGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162240484|gb|FC414373.1|FC414373
genomic: AGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162224828|gb|FC400828.1|FC400828
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: CCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18337154|gb|BJ169178.1|BJ169178
genomic: CCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162279458|gb|FC455574.1|FC455574
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: CGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162224827|gb|FC400827.1|FC400827
genomic: CGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: CCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|37833743|gb|BJ591755.1|BJ591755
genomic: CCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCNTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18328912|gb|BJ160918.1|BJ160918
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGCCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGATGGGEST: gi|162229541|gb|FC405875.1|FC405875
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67507846|gb|BJ940722.1|BJ940722
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: TCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18328944|gb|BJ160950.1|BJ160950
genomic: TCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67575474|gb|BJ948298.1|BJ948298
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67698944|gb|BJ959177.1|BJ959177
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162235488|gb|FC411311.1|FC411311
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162235489|gb|FC411312.1|FC411312
genomic: GGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67576767|gb|BJ949591.1|BJ949591
genomic: GGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GTCAGCTCGGCATCCCTCGCCGAACCAGTGTTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67579122|gb|BJ951273.1|BJ951273
genomic: GTCAGCTCGGCATCCCTCGCCGAACCAGTG-TCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: CCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18356803|gb|BJ188862.1|BJ188862
genomic: CCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162222208|gb|FC397644.1|FC397644
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18357996|gb|BJ190055.1|BJ190055
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67695264|gb|BJ955497.1|BJ955497
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162227817|gb|FC403967.1|FC403967
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162274368|gb|FC450395.1|FC450395
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162239783|gb|FC417182.1|FC417182
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162274496|gb|FC450731.1|FC450731
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67699627|gb|BJ959860.1|BJ959860
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|67576136|gb|BJ948960.1|BJ948960
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: TCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162279459|gb|FC455575.1|FC455575
genomic: TCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: CGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162241574|gb|FC414696.1|FC414696
genomic: CGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCTGACGGCCTTCCAAG ATGGATAGAGAGAAGCTATTGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|18353616|gb|BJ185671.1|BJ185671
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162159448|gb|FC336237.1|FC336237
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|37822000|gb|BJ580066.1|BJ580066
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162229542|gb|FC405876.1|FC405876
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGEST: gi|162203658|gb|FC379144.1|FC379144
genomic: GGTCAGCTCGGCATCCCTCGCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
EST: GCCGAACCAGTGTCGCCGACGGCCTTCCAAG ATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
genomic: GCCGAACCAGTGTCGCCGACGGCCTTCCAAGgtacgcgtct ... tgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGG
gagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
atttaat putative branch site (score: 4)
atttaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacatagtatttcacataatcaggtgttgagtagacttttaaagagtatatgttgttactgcatggcatttaatcatcttgaatggaatgccgagcagATGGATAGAGAGAAGCTAATGAAGATGGCTAGTGCAGTGCGCACTGGTGGGAAGGGCAGTGTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG