1 5' 3' | 2 5' 3' | 3 5' 3' |
...agatactcgcaatgtaggccgattagtctccacattattgtgaaagtccaagagtgcattttttgggagttgatctcattccatgcattttcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACTGTAATTGAGGGGAAAGATTGAGCCATGAGTACCCCAGGCGCGGCGCCA
species | Physcomitrella patens |
transcript | PP1S478_13V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTG GTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACEST: gi|100359900|gb|BY947178.1|BY947178
genomic: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTGgtgaggtttc ... tcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
EST: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTG GTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACEST: gi|208386347|gb|DC932843.1|DC932843
genomic: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTGgtgaggtttc ... tcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
EST: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTG GTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACEST: gi|18331663|gb|BJ163674.1|BJ163674
genomic: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTGgtgaggtttc ... tcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
EST: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTG GTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACEST: gi|100405329|gb|BY955471.1|BY955471
genomic: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTGgtgaggtttc ... tcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
EST: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTG GTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
genomic: AAGAGCCTACGTCGTCGTTGGCTGAGAGGTGGATTGCGGTCTTGGTACTGgtgaggtttc ... tcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGAC
gtccaagagtgcattttttgggagttgatctcattccatgcattttcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACTGTAATTGAGGGGAAAGATTGAGCCATGAGTACCCCAGGCGCGGCGCCA
agttgat putative branch site (score: 3)
cattttc putative PPT
atttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatactcgcaatgtaggccgattagtctccacattattgtgaaagtccaagagtgcattttttgggagttgatctcattccatgcattttcatgagcagGTGACAAACAGATCAGACCCCAGGGTTTGTTGTCGTCTCTTTCCAGGGGACTGTAATTGAGGGGAAAGATTGAGCCATGAGTACCCCAGGCGCGGCGCCA
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