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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgataattcgacagagtttatgagtagaatttaagaatgggagtaatatcaatgttctgctcttaaccaattgaacgtgttggtgaatgcgtggtgtagGCAAAATTAAACTTTTGGTGAAGGTGGCAATATCTCCTGCTCACTTTTAAGGTGACTGATCAGGACAGGGCATTCGAACTTCACCATGGCACAGCGAGCG

Basic information

species Physcomitrella patens
transcript PP1S478_10V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100374207|gb|BY985713.1|BY985713
EST:     ATGAGTATTGTCTCACGTGCGGAGACCGGCGCATGATGGAGGGTTTTGAG                         GCAAAATTAAACTTTTGGTGAAGGTGGCAATATCTCCTGCTCACTTTTAAG
genomic: ATGAGTATTGTCTCACGTGCGGAGACCGGCGCATGATGGAGGGTTTTGAGgtattgtgag ... cgtggtgtagGCAAAATTAAACTTTTGGTGAAGGTGGCAATATCTCCTGCTCACTTTTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatcaatgttctgctcttaaccaattgaacgtgttggtgaatgcgtggtgtagGCAAAATTAAACTTTTGGTGAAGGTGGCAATATCTCCTGCTCACTTTTAAGGTGACTGATCAGGACAGGGCATTCGAACTTCACCATGGCACAGCGAGCG
                tcttaac  putative branch site (score: 2)
                        aattgaa  TA-rich tract