1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttctactttagggttttttaccttgctacttcaaacctactttatgaacaactggtgcgatactcacatggttaagggcttctcgttgcaagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCCATCGCCGAACGACATGGCTGGTCGAGGCGGGAACTTCATTGCTAGAGT
species | Physcomitrella patens |
transcript | PP1S477_4V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGG TGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCEST: gi|162209672|gb|FC386171.1|FC386171
genomic: TCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGGgtatacatcc ... aagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
EST: GCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGG TGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCEST: gi|67692786|gb|BJ953019.1|BJ953019
genomic: GCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGGgtatacatcc ... aagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
EST: GCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGG TGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCEST: gi|208397376|gb|DC916330.1|DC916330
genomic: GCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGGgtatacatcc ... aagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
EST: CGCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGG TGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCEST: gi|208354215|gb|DC902457.1|DC902457
genomic: CGCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGGgtatacatcc ... aagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
EST: CGCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGG TGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
genomic: CGCTCGCTCTTGGTCTCTCTCTCCGCCCCTTCGTTTGCAACGCAAGGgtatacatcc ... aagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTC
tgaacaactggtgcgatactcacatggttaagggcttctcgttgcaagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCCATCGCCGAACGACATGGCTGGTCGAGGCGGGAACTTCATTGCTAGAGT
tactcac putative branch site (score: 3)
aagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctactttagggttttttaccttgctacttcaaacctactttatgaacaactggtgcgatactcacatggttaagggcttctcgttgcaagaaatcagTGAAGAAGGCGGAAGGTTGGTTGTGTCACATTTTACCGCGTTGACGTTCTCCATCGCCGAACGACATGGCTGGTCGAGGCGGGAACTTCATTGCTAGAGT
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