Sequence
atgc intronic sequence ATGC exonic sequence...tgcgaaggcgatgagagtcgatttgtagtgagggacgtagttgtgaagtatttctttctttgatttgttgttgttgttgtcgttgttgttattgatgcagTGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGTTGGCAAGGAAGGCAGTGGCAGATGCGTCCATAACATTCTTATGGGTATT
Basic information
species | Physcomitrella patens |
transcript | PP1S475_9V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100389362|gb|BY971112.1|BY971112EST: GCTGTATGCGGATGTGTCGAGAGAGGTAAAATTTCGTAGGTGTTTGCAAG TGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGT
genomic: GCTGTATGCGGATGTGTCGAGAGAGGTAAAATTTCGTAGGTGTTTGCAAGgtaggctttg ... attgatgcagTGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGT
EST:
gi|162230082|gb|FC406022.1|FC406022EST: GCGGATGTGTCGAGAGAGGTAAAATTTCGTAGGTGTTTGC-A- --------AGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGT
genomic: GCGGATGTGTCGAGAGAGGTAAAATTTCGTAGGTGTTTGCAAGgtaggctttg ... attgatgcagTGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtatttctttctttgatttgttgttgttgttgtcgttgttgttattgatgcagTGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGTTGGCAAGGAAGGCAGTGGCAGATGCGTCCATAACATTCTTATGGGTATT
tattgat putative branch site (score: 3)
tttgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcgaaggcgatgagagtcgatttgtagtgagggacgtagttgtgaagtatttctttctttgatttgttgttgttgttgtcgttgttgttattgatgcagTGTTTTTCAGAATTCGCAGAGTTTGAGGGGGCGGGGTTGACGCGATGGGGTTGGCAAGGAAGGCAGTGGCAGATGCGTCCATAACATTCTTATGGGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG