Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttcccttgtttcgatcccttgttaaatgccgtagttttcatccttattatggttaatttcatctctattgtctgtgtgtgtgcgtccgtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGCACAGGATGTTTCCCTAGCAAAGGGAGCAAATCTGTGGGAGCTGGATCCG

Basic information

species Physcomitrella patens
transcript PP1S475_5V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208390544|gb|DC937476.1|DC937476
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100361311|gb|BY965777.1|BY965777
EST:     GAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: GAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100359621|gb|BY947072.1|BY947072
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100377235|gb|BY968428.1|BY968428
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208397445|gb|DC908293.1|DC908293
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100417104|gb|BY957169.1|BY957169
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATCCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208377817|gb|DC940929.1|DC940929
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100361900|gb|BY947683.1|BY947683
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100399593|gb|BY972796.1|BY972796
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208361391|gb|DC935092.1|DC935092
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208393625|gb|DC904341.1|DC904341
EST:     TCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208351539|gb|DC909983.1|DC909983
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208363503|gb|DC935268.1|DC935268
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100380074|gb|BY968833.1|BY968833
EST:     ACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100440032|gb|BY980361.1|BY980361
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208348213|gb|DC913150.1|DC913150
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208387979|gb|DC941660.1|DC941660
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|19780785|gb|BQ039612.1|BQ039612
EST:     GTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: GTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100438940|gb|BY961880.1|BY961880
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100352993|gb|BY945553.1|BY945553
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100423148|gb|BY958170.1|BY958170
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100445803|gb|CJ970102.1|CJ970102
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208363299|gb|DC935480.1|DC935480
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208353749|gb|DC938774.1|DC938774
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|18369029|gb|BJ201114.1|BJ201114
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTANGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100386922|gb|BY988191.1|BY988191
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100368731|gb|BY967143.1|BY967143
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208377161|gb|DC910893.1|DC910893
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100377258|gb|BY968439.1|BY968439
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100437604|gb|BY979736.1|BY979736
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208367185|gb|DC935971.1|DC935971
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100363154|gb|BY984384.1|BY984384
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208356379|gb|DC934397.1|DC934397
EST:     GTTTTCGAGGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: GTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100435614|gb|BY961002.1|BY961002
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGA-TTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208376275|gb|DC940973.1|DC940973
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|18345606|gb|BJ177649.1|BJ177649
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100436356|gb|BY961176.1|BY961176
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100444306|gb|BY982335.1|BY982335
EST:     ATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: ATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100361247|gb|BY946987.1|BY946987
EST:     AGACATGCAGCTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|208353611|gb|DC929696.1|DC929696
EST:     GCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: GCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100441661|gb|BY962752.1|BY962752
EST:     TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: TGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
EST: gi|100451898|gb|CJ974997.1|CJ974997
EST:     AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTG                         GTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC
genomic: AGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 31 (downstream exon)
Score: 7

TGCTTTGCTTTCTTTCAAGCCTAGCATTGTGTTGTAGCAGGGTGCTGGGTTTTCGAAGCAGACATGCAGTTCTTTGTTAGTAGGCTGGCCTGgtatgccatt ... gtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGCACAGGATGTTTCCCTAGCAAAGGGAGCAAATCTGTGGGAGCTGGATCCG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttattatggttaatttcatctctattgtctgtgtgtgtgcgtccgtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGCACAGGATGTTTCCCTAGCAAAGGGAGCAAATCTGTGGGAGCTGGATCCG
        ggttaat  putative branch site (score: 7)
          ttaatttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actttcccttgtttcgatcccttgttaaatgccgtagttttcatccttattatggttaatttcatctctattgtctgtgtgtgtgcgtccgtgctcacagGTGTAACTCTCTTTCTTGAAAGAATTCAGTGATATAATTATGGGGAAAGGCACAGGATGTTTCCCTAGCAAAGGGAGCAAATCTGTGGGAGCTGGATCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA