1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaggccaacgtattgtcataacgctgggattaaatattacagacactctgtgtagtttacgcagttagagaagctgctaatttctggttgcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAGATATTTTGGTGTTTCCCGACATGGTGAAGTATAA
species | Physcomitrella patens |
transcript | PP1S475_2V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGANAGGACAAACGGAEST: gi|18372909|gb|BJ204511.1|BJ204511
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|67578446|gb|BJ950613.1|BJ950613
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|162171220|gb|FC346378.1|FC346378
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|100447818|gb|CJ972117.1|CJ972117
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|67572167|gb|BJ944991.1|BJ944991
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|100452132|gb|CJ975116.1|CJ975116
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGEST: gi|100363224|gb|BY984419.1|BY984419
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGG
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|100372450|gb|BY985605.1|BY985605
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|67507761|gb|BJ940640.1|BJ940640
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|18343889|gb|BJ175927.1|BJ175927
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACEST: gi|162165943|gb|FC340968.1|FC340968
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGAC
EST: NTAA-CTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTEST: gi|100445740|gb|CJ970039.1|CJ970039
genomic: -TAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATT
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|162276055|gb|FC452331.1|FC452331
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|162220129|gb|FC395406.1|FC395406
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|67574046|gb|BJ946870.1|BJ946870
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAEST: gi|162222735|gb|FC398989.1|FC398989
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|18348573|gb|BJ180622.1|BJ180622
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|18327560|gb|BJ159563.1|BJ159563
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGAEST: gi|100447282|gb|CJ971581.1|CJ971581
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGANT-ACCGAA-AAG AATCGCTTGACTATEST: gi|162160798|gb|FC336697.1|FC336697
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTAT
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|100371055|gb|BY985916.1|BY985916
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAEST: gi|100409632|gb|BY956028.1|BY956028
genomic: CTAAACTGGTCAGTACGCTGCGTAGCAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
EST: TAAACTGGTCAGTACGCTGCGTAGNCA-GAGAAACGAATTACCGAAGAAG ACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAG-ACAAACGGA
genomic: TAAACTGGTCAGTACGCTGCGTAG-CAAGAGAAACGAATTACCGAAGAAGgtacgcaggc ... gcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGA
actctgtgtagtttacgcagttagagaagctgctaatttctggttgcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAGATATTTTGGTGTTTCCCGACATGGTGAAGTATAA
tgctaat putative branch site (score: 23)
ttgctttt putative PPT
taatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggccaacgtattgtcataacgctgggattaaatattacagacactctgtgtagtttacgcagttagagaagctgctaatttctggttgcttttgtagACTCGCTTGACTATTGCCGATGGCCAAGATGAGCCTGAAAGGACAAACGGAGATATTTTGGTGTTTCCCGACATGGTGAAGTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT