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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtctgcatcttttgttgctgcaacttgataccaacacctttatgccctcgtcagtcatgaaagataattcactgactgagcaacagtggattatgcagATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGACAATTATTGTTAAACTCAAATTGCTTACAACCCCAGTCTCTTTTTTCAA

Basic information

species Physcomitrella patens
transcript PP1S474_4V6.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100440826|gb|BY962315.1|BY962315
EST:     TGTCTTCGAGTATTGCCCAATTTTTTGTTTCGCGAACAGCAACATAGAGA                         ATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGA
genomic: TGTCTTCGAGTATTGCCCAATTTTTTGTTTCGCGAACAGCAACATAGAGAgtgagttatc ... gattatgcagATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGA
EST: gi|18326279|gb|BJ158278.1|BJ158278
EST:     TGTCTTCGAGTATTGCCCAATTTTTTGTTTCGCGAACAGCAACATAGAGA                         ATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGA
genomic: TGTCTTCGAGTATTGCCCAATTTTTTGTTTCGCGAACAGCAACATAGAGAgtgagttatc ... gattatgcagATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccctcgtcagtcatgaaagataattcactgactgagcaacagtggattatgcagATTTCTTCAGTGATGTGCTTATTTTTTAAGCACCTTTGCAGCTCTCAACGACAATTATTGTTAAACTCAAATTGCTTACAACCCCAGTCTCTTTTTTCAA
                          cactgac  putative branch site (score: 2)
                aaagataatt  TA-rich tract