1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtctaacacggtcgttgtcctgttctacacaagactagatctatgttatggatggagcatctgtgataacctcgttcatttttttgtgtgtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCATACCGTAAATGTTCGTCCTAAATTATGGGATGACAAGTACCCACCTGCC
species | Physcomitrella patens |
transcript | PP1S473_1V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAANGGTGGTGGAGTTTCCTTTAGCTCGCAATTTATTATCGCEST: gi|162185768|gb|FC362324.1|FC362324
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTC-TTTAGCTCGCAATTTATTATCGC
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCAEST: gi|100441606|gb|BY981028.1|BY981028
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCAEST: gi|162188069|gb|FC365267.1|FC365267
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCAEST: gi|100429948|gb|BY978170.1|BY978170
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCAEST: gi|162160848|gb|FC337670.1|FC337670
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
EST: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATC TGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
genomic: CCGAACAGGTCGATCGAGAATGATTTAGAGGTGGCGGCGCCATCGATATCgtacgtggtc ... gtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCA
gttatggatggagcatctgtgataacctcgttcatttttttgtgtgtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCATACCGTAAATGTTCGTCCTAAATTATGGGATGACAAGTACCCACCTGCC
tgataac putative branch site (score: 10)
ttcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtctaacacggtcgttgtcctgttctacacaagactagatctatgttatggatggagcatctgtgataacctcgttcatttttttgtgtgtttcaacagTGCGATAGCGAAGGGTGGTGGAGTTTCTTTAGCTCGCAATTTATTATCGCATACCGTAAATGTTCGTCCTAAATTATGGGATGACAAGTACCCACCTGCC
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