1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcccttctgttgcgtccacagaacatgcgtgttcttatggagcttggtatagttatagaatattttgtagttttcagagtgtcagtggtgtgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATCAGTAGGCGCTTCTTCCCTTTCAAGAGTAGTAGGCACTGCCCATCACTC
species | Physcomitrella patens |
transcript | PP1S46_84V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAG GGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATEST: gi|162165699|gb|FC342266.1|FC342266
genomic: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAGgtgtgtgttt ... tgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
EST: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAG GGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATEST: gi|162196367|gb|FC373552.1|FC373552
genomic: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAGgtgtgtgttt ... tgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
EST: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAG GGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATEST: gi|18356024|gb|BJ188083.1|BJ188083
genomic: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAGgtgtgtgttt ... tgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
EST: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAG GGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATEST: gi|162257444|gb|FC433513.1|FC433513
genomic: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAGgtgtgtgttt ... tgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
EST: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAG GGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
genomic: GGAAAAGAAAACTGGGAGCAGTAATGTGGCATCGGCCGCTCGGCTACGAGgtgtgtgttt ... tgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCAT
ggtatagttatagaatattttgtagttttcagagtgtcagtggtgtgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATCAGTAGGCGCTTCTTCCCTTTCAAGAGTAGTAGGCACTGCCCATCACTC
ttatagaatattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccttctgttgcgtccacagaacatgcgtgttcttatggagcttggtatagttatagaatattttgtagttttcagagtgtcagtggtgtgtgttacagGGAGACGTTTCCCTCGGAATTCAGTGCTTCATGAAGAGTATCAGCTCGCATCAGTAGGCGCTTCTTCCCTTTCAAGAGTAGTAGGCACTGCCCATCACTC
- - - - - - - - - - -aacatgc