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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcttgagattcgatttctgtcgtactcccacacgtacaacatggagtttggaatgatcattcatagttttattctgaaatctttgtattctgtttacagGGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCCGCAATAAACGCCAGATTGCACGGGTTCCAAGTTATTGACGCCGCGAAAC

Basic information

species Physcomitrella patens
transcript PP1S46_76V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7207201|gb|AW561204.1|AW561204
EST:     TTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGA                         GGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC
genomic: TTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGAgtaagtacct ... ctgtttacagGGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC
EST: gi|67577904|gb|BJ950071.1|BJ950071
EST:     CTGTTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGA                         GGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC
genomic: CTGTTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGAgtaagtacct ... ctgtttacagGGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC
EST: gi|162203582|gb|FC379068.1|FC379068
EST:     CTGTTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGA                         GGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC
genomic: CTGTTGCACCAGGACTGCTCCGCTTGATATTCCATGATTGCTTTGTTCGAgtaagtacct ... ctgtttacagGGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttggaatgatcattcatagttttattctgaaatctttgtattctgtttacagGGTTGCGACGCATCTGTTCTGTTGAGTGGAAGAAGATCTGAAAGGGCGTCCGCAATAAACGCCAGATTGCACGGGTTCCAAGTTATTGACGCCGCGAAAC
                                           ttctgttt  CT-rich tract
              attcatagttttatt  TA-rich tract