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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatggagcctctacgcatggattgctggagtggtttatatataaacgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT

Basic information

species Physcomitrella patens
transcript PP1S46_72V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_72V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
gatggagcctctacgcatggattgctggagtggtttatatataaacgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT
    |  | |  | |  |   || ||     |  || | | | |       | |   || ||| ||       | |    |    |      | || ||||||||||||| |||||||||| |||||| | || ||  |||||||||| ||  |||| || || ||||||||||| ||||||||  |  |  | ||| | 
----gtactttaaagagtatttttctatgaagccttgt-tgtgagattgattatgt-tcaatatatttgacactatggtttggttt------tgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

upper sequence: PP1S46_72V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EDP01709 (Chlamydomonas reinhardtii), 3'ss of exon 3
gatggagcctctacgcatggattg-ctggag--tggtttatatataaacgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT
   |||| ||   | | ||  | | |||||         | ||   ||   |||  |     |   | |      | |    ||  || || |       ||| || || ||    ||||||||||||||  | ||||| || ||||| ||||| |||||||| ||||||||||| || ||||||||                
-gcggagactgcgctcctgcctagactggaagccacgccacatgcgaagtgaccccttttcttggtcgtttccccaccc--tctccccccttcccgcgcgcagCCCCGACGGCCAGAAGAAGGCGTACGTCTGCCTCACCGCGGACTACGACGCCCTGGACGTTGCCAACAAGATTGGCATCATCTAA---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67727376|gb|BJ977635.1|BJ977635
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|208383968|gb|DC907359.1|DC907359
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67723130|gb|BJ973389.1|BJ973389
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162240894|gb|FC415173.1|FC415173
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|37852545|gb|BJ610553.1|BJ610553
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162228036|gb|FC405657.1|FC405657
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|6102287|gb|AW126757.1|AW126757
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGNTACGTGCGACTCACGGCAGACTATGACG
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCG-TACGTGCGACTCACGGCAGACTATGACG
EST: gi|162274440|gb|FC450675.1|FC450675
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162259021|gb|FC435132.1|FC435132
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67722163|gb|BJ972422.1|BJ972422
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|37844409|gb|BJ602417.1|BJ602417
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162201032|gb|FC378163.1|FC378163
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67704634|gb|BJ964867.1|BJ964867
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67722881|gb|BJ973140.1|BJ973140
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATAGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67716568|gb|BJ966828.1|BJ966828
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720367|gb|BJ970626.1|BJ970626
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTAATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|15320119|gb|BI487695.1|BI487695
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67726710|gb|BJ976969.1|BJ976969
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGATCTATGACG
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGA-CTATGACG
EST: gi|162260572|gb|FC436160.1|FC436160
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67724556|gb|BJ974815.1|BJ974815
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67721204|gb|BJ971463.1|BJ971463
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67723169|gb|BJ973428.1|BJ973428
EST:     GTCAAGAAAATATACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67726005|gb|BJ976264.1|BJ976264
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162225875|gb|FC402167.1|FC402167
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67712797|gb|BJ966246.1|BJ966246
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67704674|gb|BJ964907.1|BJ964907
EST:     GTCAAGAAAATATACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162199991|gb|FC376258.1|FC376258
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162218879|gb|FC394422.1|FC394422
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162254338|gb|FC430473.1|FC430473
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67719047|gb|BJ969306.1|BJ969306
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67725682|gb|BJ975941.1|BJ975941
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67712679|gb|BJ966128.1|BJ966128
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162231731|gb|FC407674.1|FC407674
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162249943|gb|FC427044.1|FC427044
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67724508|gb|BJ974767.1|BJ974767
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720733|gb|BJ970992.1|BJ970992
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720179|gb|BJ970438.1|BJ970438
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720150|gb|BJ970409.1|BJ970409
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162279098|gb|FC455437.1|FC455437
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162199990|gb|FC376257.1|FC376257
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGAGGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGATTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67724393|gb|BJ974652.1|BJ974652
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|208346057|gb|DC921302.1|DC921302
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162232569|gb|FC408405.1|FC408405
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162232999|gb|FC408406.1|FC408406
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162233424|gb|FC410221.1|FC410221
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162260395|gb|FC435034.1|FC435034
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67717343|gb|BJ967602.1|BJ967602
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67718223|gb|BJ968482.1|BJ968482
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67724575|gb|BJ974834.1|BJ974834
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162249942|gb|FC427043.1|FC427043
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162224895|gb|FC401103.1|FC401103
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162259020|gb|FC435131.1|FC435131
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162202753|gb|FC379540.1|FC379540
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162245514|gb|FC423262.1|FC423262
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162169027|gb|FC345709.1|FC345709
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67722854|gb|BJ973113.1|BJ973113
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162267882|gb|FC444483.1|FC444483
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162279099|gb|FC455438.1|FC455438
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162231679|gb|FC407648.1|FC407648
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|18345007|gb|BJ177048.1|BJ177048
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|37839543|gb|BJ597551.1|BJ597551
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720758|gb|BJ971017.1|BJ971017
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGTAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|37824210|gb|BJ582276.1|BJ582276
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720064|gb|BJ970323.1|BJ970323
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGNGACTCACGGCAGANTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67726762|gb|BJ977021.1|BJ977021
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67725086|gb|BJ975345.1|BJ975345
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67712868|gb|BJ966317.1|BJ966317
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67722831|gb|BJ973090.1|BJ973090
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162240895|gb|FC415174.1|FC415174
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|6167398|gb|AW145662.1|AW145662
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162260396|gb|FC435035.1|FC435035
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67718272|gb|BJ968531.1|BJ968531
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162208588|gb|FC384777.1|FC384777
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67712847|gb|BJ966296.1|BJ966296
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|208384806|gb|DC907419.1|DC907419
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67717161|gb|BJ967420.1|BJ967420
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|67720552|gb|BJ970811.1|BJ970811
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162207107|gb|FC382221.1|FC382221
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|18359139|gb|BJ191199.1|BJ191199
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162228037|gb|FC405658.1|FC405658
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
EST: gi|162225876|gb|FC402168.1|FC402168
EST:     GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAG                         GCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC
genomic: GTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 94

TGGTCTTCATTGTGGACGTGCGCGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgttt ... aatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT
                           atctaac  putative branch site (score: 94)
              tatacatacatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatggagcctctacgcatggattgctggagtggtttatatataaacgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - ctgtaca