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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgatggtgtatagttacacccatgaatctactaactactgagaaatcaccgatgctttttacaattgtgcaatttgcactttaagggaacgaatttcagggtctgacttgttcgttggctttcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC

Basic information

species Physcomitrella patens
transcript PP1S46_43V6.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100399060|gb|BY954179.1|BY954179
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGCAG                       
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTC--GAG-AGgtaggtgatg ... tcgtcagc
EST: gi|208390540|gb|DC937472.1|DC937472
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         GGATATGAGACCGAAAATGACTCTANCGACGTT-GGNAACCTCA-TATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18352369|gb|BJ184423.1|BJ184423
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100402583|gb|BY954908.1|BY954908
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGGAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18354936|gb|BJ186995.1|BJ186995
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100421359|gb|BY976168.1|BY976168
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTNGCGAC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGAC
EST: gi|208349978|gb|DC913686.1|DC913686
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100390535|gb|BY952943.1|BY952943
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100418644|gb|BY957519.1|BY957519
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100438691|gb|BY961753.1|BY961753
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|208383042|gb|DC915314.1|DC915314
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAA-CCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100412710|gb|BY974869.1|BY974869
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|162185617|gb|FC362030.1|FC362030
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGGAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18357975|gb|BJ190034.1|BJ190034
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
EST: gi|100425493|gb|BY958623.1|BY958623
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100417350|gb|BY957288.1|BY957288
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         C
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcag-
EST: gi|100417350|gb|BY957288.1|BY957288
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         C
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcag-
EST: gi|100417350|gb|BY957288.1|BY957288
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         C
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcag-
EST: gi|100370930|gb|BY968125.1|BY968125
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACC-TCAATATTC
EST: gi|100384686|gb|BY950676.1|BY950676
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18351818|gb|BJ183870.1|BJ183870
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTG
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTG
EST: gi|100413311|gb|BY956609.1|BY956609
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACC-TCAATATTC
EST: gi|18350799|gb|BJ182850.1|BJ182850
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|100420641|gb|BY993442.1|BY993442
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
EST: gi|18351965|gb|BJ184017.1|BJ184017
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         GGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... tcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttaagggaacgaatttcagggtctgacttgttcgttggctttcgtcagcagGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC
                        gtctgac  putative branch site (score: 3)
                                          ctttcgtc  putative PPT
               aatttca  TA-rich tract