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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgatggtgtatagttacacccatgaatctactaactactgagaaatcaccgatgctttttacaattgtgcaatttgcactttaagggaacgaatttcagggtctgacttgttcgttggctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC

Basic information

species Physcomitrella patens
transcript PP1S46_43V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208390540|gb|DC937472.1|DC937472
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         --GG-ATATGAGACCGAAAATGACTCTANCGACGTT-GGNAACCTCA-TAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100402583|gb|BY954908.1|BY954908
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGGAAATGACTCTNGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|208349978|gb|DC913686.1|DC913686
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100399060|gb|BY954179.1|BY954179
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         CAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100418644|gb|BY957519.1|BY957519
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|162185617|gb|FC362030.1|FC362030
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGGAAATGACTCTNGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100390535|gb|BY952943.1|BY952943
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100421359|gb|BY976168.1|BY976168
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTNGCGAC
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGAC
EST: gi|100420641|gb|BY993442.1|BY993442
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100412710|gb|BY974869.1|BY974869
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|18352369|gb|BJ184423.1|BJ184423
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100438691|gb|BY961753.1|BY961753
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100417350|gb|BY957288.1|BY957288
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         CAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100425493|gb|BY958623.1|BY958623
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTC--GAG                         -AGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100370930|gb|BY968125.1|BY968125
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCTCA-TA
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACC-TCAATA
EST: gi|18351818|gb|BJ183870.1|BJ183870
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTG
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTG
EST: gi|100413311|gb|BY956609.1|BY956609
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCCTCA-TA
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACC-TCAATA
EST: gi|18357975|gb|BJ190034.1|BJ190034
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCNAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCA
EST: gi|18350799|gb|BJ182850.1|BJ182850
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|18354936|gb|BJ186995.1|BJ186995
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|100384686|gb|BY950676.1|BY950676
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
EST: gi|18351965|gb|BJ184017.1|BJ184017
EST:     AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAG                         --GG-ATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT
genomic: AATTTTATCGCGTTTGCCGTCTTGGCTCCTTTCGCCTACTATGTCGAGAGgtaggtgatg ... ctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcactttaagggaacgaatttcagggtctgacttgttcgttggctttcgtcagCAGGGATATGAGACCGAAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC
                           gtctgac  putative branch site (score: 3)
                                             ctttcgtc  putative PPT
                  aatttca  TA-rich tract