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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcggtcgattccgcatagtttcatcagaggagacgcgcagttggcgatctgcgagctaacttctgagctaaaatctatcagtttactgtttgggtgcagTTTTCCAGTATGTGGCAGCAGCTCATGACGTGGTAACTTTGGGAACCCAAGCAGAGTACGACGGTTGCGATTCAACTACTCCCTTGAACAGAACCCAGAC

Basic information

species Physcomitrella patens
transcript PP1S46_32V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18362241|gb|BJ194311.1|BJ194311
EST:     CGTGTGGGCTCAGAATGTCTCCAGTTATCTTGTTGAAGGCGATGTGATCA                         TTTTCCAGTATGTGGCAGCAGCTCATGACGTGGTAACTTTGGGAACCCAAG
genomic: CGTGTGGGCTCAGAATGTCTCCAGTTATCTTGTTGAAGGCGATGTGATCAgtaagtccgt ... ttgggtgcagTTTTCCAGTATGTGGCAGCAGCTCATGACGTGGTAACTTTGGGAACCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatctgcgagctaacttctgagctaaaatctatcagtttactgtttgggtgcagTTTTCCAGTATGTGGCAGCAGCTCATGACGTGGTAACTTTGGGAACCCAAGCAGAGTACGACGGTTGCGATTCAACTACTCCCTTGAACAGAACCCAGAC
                        taaaatctat  TA-rich tract