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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggattttagtggttaatgtcagtgattgtgggatttttattttcttttttctcttctcttgggaagtggagcttacgtgtgacatgaccttgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATGCCGACTTCTTAGTCGACTTGGGTCACCCATTATTAAATCGAGTCGTTG

Basic information

species Physcomitrella patens
transcript PP1S46_326V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278434|gb|FC454520.1|FC454520
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162265952|gb|FC442955.1|FC442955
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259016|gb|FC435127.1|FC435127
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208381670|gb|DC915536.1|DC915536
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259138|gb|FC436432.1|FC436432
EST:     TGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208367972|gb|DC950997.1|DC950997
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162269068|gb|FC444936.1|FC444936
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162264590|gb|FC440886.1|FC440886
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|67576061|gb|BJ948885.1|BJ948885
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162229199|gb|FC404558.1|FC404558
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259211|gb|FC436466.1|FC436466
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|67569310|gb|BJ942134.1|BJ942134
EST:     ACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: ACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208395552|gb|DC928967.1|DC928967
EST:     TCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259139|gb|FC436433.1|FC436433
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162276798|gb|FC452792.1|FC452792
EST:     CGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTTTGTGAACACCCCCCAG
genomic: CGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162226856|gb|FC403044.1|FC403044
EST:     CTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: CTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208391705|gb|DC937937.1|DC937937
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|19784287|gb|BQ040153.1|BQ040153
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162271484|gb|FC446433.1|FC446433
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208384616|gb|DC915219.1|DC915219
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162276799|gb|FC452793.1|FC452793
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162229198|gb|FC404557.1|FC404557
EST:     CTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: CTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259212|gb|FC436467.1|FC436467
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162276680|gb|FC452258.1|FC452258
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|67692570|gb|BJ952803.1|BJ952803
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162271530|gb|FC446479.1|FC446479
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162245700|gb|FC419600.1|FC419600
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162226857|gb|FC403045.1|FC403045
EST:     CTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: CTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259912|gb|FC436047.1|FC436047
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162280258|gb|FC456275.1|FC456275
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162262668|gb|FC438463.1|FC438463
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162262669|gb|FC438464.1|FC438464
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|162259370|gb|FC436235.1|FC436235
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
EST: gi|208352185|gb|DC901706.1|DC901706
EST:     TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAG                         ACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT
genomic: TTCTCCACCCTCTTCCTTCTCCTGCTTCGTGCGTTGTTTGGAGTTTCCAGgtgggtttct ... tgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctcttctcttgggaagtggagcttacgtgtgacatgaccttgaactgcagACTTTCAAGATGGTAAGGGCTCACGTAAGTGCTTCTGTGAACACCCCCCATGCCGACTTCTTAGTCGACTTGGGTCACCCATTATTAAATCGAGTCGTTG
                        agcttac  putative branch site (score: 3)