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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcttgtcagtgttaaatttacagaatcctgcttgcggaagttctggaatcaagaagggcaacctcacagaaactgacttttcctttgtttttatcagGACAAGTACGAATTCGCTTCTTCTTGCTCATAGTGTCATGTATCTGACCAGGATTACCTTCTGTCCTTGTTTGTAAGTATTTTTATTTGCTAGACCTGGC

Basic information

species Physcomitrella patens
transcript PP1S46_275V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578364|gb|BJ950531.1|BJ950531
EST:     TTTGGTTTCGCAGATGCTTCCACCTTGCGTGCTTGTGCAATATTTAGAAG                         GACAAGTACGAATTCGCTTCTTCTTGCTCATAGTGTCATGTATCTGACCAG
genomic: TTTGGTTTCGCAGATGCTTCCACCTTGCGTGCTTGTGCAATATTTAGAAGgtgagtggag ... tttttatcagGACAAGTACGAATTCGCTTCTTCTTGCTCATAGTGTCATGTATCTGACCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggaatcaagaagggcaacctcacagaaactgacttttcctttgtttttatcagGACAAGTACGAATTCGCTTCTTCTTGCTCATAGTGTCATGTATCTGACCAGGATTACCTTCTGTCCTTGTTTGTAAGTATTTTTATTTGCTAGACCTGGC
                            aactgac  putative branch site (score: 2)
                                  cttttcctttgttttt  CT-rich tract
                                         tttgtttttat  TA-rich tract