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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

Basic information

species Physcomitrella patens
transcript PP1S45_97V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
             |  || ||| |  |||   | |    ||| ||     |    ||   ||  ||||  |  | | |     | |     |||    |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||| || || ||
------------gtaagctcccaatcttccccttcactttctcggggccagatctga---tctgagatgaggttgacac----acgacgcatgca---agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
-ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaa----ggtttttgcgc-gcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
   || |  |||  |    | | |  |  | |  |    ||||   |    |  ||   ||| | |  || ||||  |  | ||||    |||| |      ||||||||||| || || || || || ||   ||| || || || |||||   |||||| ||||||||||| ||||||||||||||||||||||| || |||||
agaaaaaaagatcgtaaaaagctcgat--caaacgatcgatctgcaa----gtttctgcattacgaattacgaattgatggatgaaatttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
--------ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
        | | | |   ||| ||| |    | ||  |||      ||   |    ||     |  |||     || ||  |  | | |      | | |    ||||||||||| || || || || || || ||||| || || || ||||| |||||||| |||||||| || ||||| ||||||||||| ||||| || |||||
ccgattggagatcggatttgtggggaaaaaaagttgggagctttggattctgttcttgatggggggatttgcttatttgctttcattcg-----atctgt---tgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatg----------gtgaaggt-ttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
     || ||  |||||         | |  ||| ||         | ||    |||||||  | |   ||||| | |||          ||| | || | | || |||||||||||| || || || || |||||||||||||| || || ||||| ||||||||||| ||||| || ||||| || |||||||| ||||| || |||||
----gagagaatttgggt----tggatccatgtggctgg---gacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttg----cgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
      |     | |||   |   || |||  | ||  |    ||        |          || |    |  |    || |   |  |||     |||||||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||||| || |||||||| ||||| || |||||
----tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
------ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
       |   | ||    ||||    |     ||||  ||||  ||  |      | |  | |  ||||   || |  |    |  ||   | |     ||  |||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||||| || |||||||| ||||| || |||||
gatttggtccgatcgggtgtgggatttcagaaatcgacagccttttcccgt---cagacaggcaggtcctgactacgc-tgttcttttgcttgatccgatgc--agGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
ataa-cagcgat--gttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
 ||| || | ||  | |   |  ||| |  |    || ||| |  |  |   ||   | |   ||| |    | | |   ||      || |   | ||  |||||||||||| || || || || |||||||| || || || || || |||||||| || ||||| |||||||| || |||||||| ||||| || || ||
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatcc-attcctcactcccatcacctcggctg--gtgcctagGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgc-----gcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
   ||     ||   |  |     |  |||| | | | ||||  |   ||   | ||| |    | || ||     |||       || ||||  |       ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||||||| | || ||||||||||||||||| || || || || ||
--cactcatgtgaaagtgattgatcgatcgaat-cttaatcttagggttg--tttgaagtgataaaatctgtgaggaatttcatttgtatttgaactgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
---ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
    | |||    ||   |  |     |  |||| |        |||| |      |   ||||  || | ||   | |     |  |   |||||     ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || |||||||||||||||||||| || || || ||
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaatttta---ttttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------ataac-agcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagat------atgaataaaatggtgaaggtt----tttgcg---cgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
                                                                           | | | | ||  |||||     |   | | |       | | | | |  || | ||||       ||||      |||| | |    |||   |||    |||  |    | ||| ||||| || || |||||||| || |||||||| ||||| ||||| || ||||| |||||| |||| ||||||||||||||||||||||| || |||||
gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataataatattagggtctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggat-atggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
 |       | |   |  |    | ||  |||   ||    |||  |       ||   |    ||  | | |    ||| ||      |  ||   | ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || |||||||||||| | || ||||||||||||||||| || || || || ||
-tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgcattttctgtagatttatctttaatatgaattgtttgaactgatggaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------ataacagcgatgttg--------ggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaat-aaaatggtgaaggtttttgcgcg-----------------------cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
                                                         |||||| | ||  |            |||   || | | |||  | ||  |  |  |    |      || | | || | || ||||   |     || || || |                        ||| ||||| || || || ||||| || |||||||| ||||| ||||| || ||||| |||||| |||| ||||||||||||||||||||||| || |||||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
------ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
       ||      | |   | ||    | ||  |||   ||    |||  |      |     |   ||||| |   |  |||  | |   ||  ||   | ||| ||||| ||||| ||||| ||||| |||||||| || || ||||| || |||||||||||| | || ||||||||||||||||| || || || || ||
ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcattttt---tctgtagatttatctttaatactaa---ttgatggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaatt--cctagatatgaataaaatggtgaag-gtttttgcgcg--cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
 ||||       |          | |||    |   |  | ||  || |     |||||    | | | | |   | |||  |||    |||||||      |||| ||||| || || || ||||| || ||||| || || || || || || ||||| |||||| |||| |||||||||||||| |||||||| || || ||
gtaactaactcatcaaatcaaagagtttttttttttttttttacaattt----ccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaat-tcctagatatgaataaaatggtg-aaggtttttgcgc--gcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
     | | |  |    | |  ||  |   || |  |  | |     ||  ||   ||   || | | | |   | |||  |||    |||||||      |||| |||||||| || || || || || ||||| || || || || || || ||||| |||||| |||| |||||||||||||| |||||||| || || ||
---gtaactaact--aactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagat-atgaa-taaaatggtgaaggtttttgcgcgc------agGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
     |   ||| |      |    | ||||  || |  |  |  |  ||        ||   |||||  |||  | |||  |||    | |||| |         ||| ||||| ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| |||| ||| ||||||||||||| || || ||||| ||
-----aattatgctt--tttcttcatatcgaaggcat-gttgattacttgtgtaaaccatagttagattgtgaccttaaagagtgtgtatctttgtgttattaacaagGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 3'ss of exon 1
ataacagcgatgttgg----gcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
  |  || | | || |    | | |    |||   ||      |   |  | ||     |     | || | ||||  |   || |   || |||||     ||| ||||| ||||| ||||||||||| |||||||| || || ||||| || ||||| |||||| | || ||| |||| |||||||| || || || |||||
--attagtgttcttagatcagaatctggattttaggtattgatttgtgattgtgattgggtcgggcgtaaa-atgag-atgttgttactggattttggttttagGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
ataacagcgatgttgggcaccccactttcgagtgcctcatcta--ggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
  |   |  |  ||   | ||    | |  | |  ||||   |  ||| || |      |  || | |||    ||  | || ||    | |        ||| ||||| ||||| |||||||| || |||||||| || |||||||| || ||||| |||||| |||| |||||||||||||||||||| |||||||| ||
--attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 1
--ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
    | || | |    | |              ||      | | |  |  |  || |   ||   | |  || ||   ||  |  |  |||  |  | |||| ||||| |||||||||||||| || ||||| || || || ||||| ||||||||||||||| | || ||||| || |||||||||||||| ||||| ||
tctcagcaaccaaaccgaggttaatgtccgtccgtcttgggtttggatttggatctagggcttttcaaacgtggatctgatttttta--tttgggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGACCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
------ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
        ||||  | |||||      ||    |||      |   ||  |  |     | |   ||  |   | |    |   |  | | || || |   |  |||||||||||| || ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||||| ||
tccgacgaaacaaag-tgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttt---tcttggaatgtttctaatggcttctttac--agGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
--------------------------------------------------------------------------ataacagc-gatgttgggc----accccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaat-----aaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
                                                                            ||   | ||  ||||||        | | |||  | ||    ||   |  |    | ||| ||| | |      |||     |   |  |   |  ||||    ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
--------------------------------------------------------------------------ataacagc-gatgttgggc----accccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaat-----aaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
                                                                            ||   | ||  ||||||        | | |||  | ||    ||   |  |    | ||| ||| | |      |||     |   |      |  ||||    ||||||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208350047|gb|DC910282.1|DC910282
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208400226|gb|DC908887.1|DC908887
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|67507827|gb|BJ940704.1|BJ940704
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|100432293|gb|BY960411.1|BY960411
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|100352656|gb|BY945381.1|BY945381
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|19790121|gb|BQ041643.1|BQ041643
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|162206392|gb|FC383385.1|FC383385
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|67718832|gb|BJ969091.1|BJ969091
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|100372520|gb|BY985638.1|BY985638
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|67568945|gb|BJ941769.1|BJ941769
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208355821|gb|DC930184.1|DC930184
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208388958|gb|DC932986.1|DC932986
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|18354664|gb|BJ186722.1|BJ186722
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208348535|gb|DC905814.1|DC905814
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|18351281|gb|BJ183333.1|BJ183333
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|100417075|gb|BY957154.1|BY957154
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|18354638|gb|BJ186696.1|BJ186696
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|67575975|gb|BJ948799.1|BJ948799
EST:     CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

ATCGAAGCCGGCGCCATGTCGACCTCTGCTGTGTTCAACGGAGATGAGGTCGCTCCCTTCTTCGGCTTCATTGGAGCTGCAGCTGCTCTCGTCTTCTCATgtatggactc ... ttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
                                          tttttgc  CT-rich tract
                  tagatatgaataaaat  TA-rich tract