ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

Basic information

species	Physcomitrella patens
transcript	PP1S459_9V6.2
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC---
                                                                         |    |   |  || ||  |||| | ||     |  ||||||   |  |    |  | |  |  |  ||   |          || |||   ||    | ||| |   ||   |||||||||||| ||||| |||||||| || || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||   
-------------------------------------------------------------------------taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaa---ggaatcgcatgatgcttatggtttgt--gtttgtttgatttggtgtaggtaagGTAAG--CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcagg-agaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                                      ||| |  | |   |  || ||  |||| | ||     |  ||||||   |  |    |  | |  |  |  ||   |          || |||   ||    | ||| |   ||   |||||||||||| ||||| |||||||| || || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |  
---------------------------------------------------------------------ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaa---ggaatcgcatgatgcttatggtttgt--gtttgtttgatttggtgtagGTAAGGTAAG--CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC--

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                          |||||  |   | | |   | |   |      | |||| |  || | ||    | ||   |   || | ||  | || || || | ||        |         || | ||    ||||  ||||  ||||||||||| ||||| || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||            
--------------------------------------------------------atgtgctcgattgcgcgtgcatat---ggtctcgccgctgtatatcgggtt----gttggtagtcgctgatgtgaggtttgtgtt-cgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAA-ATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                            ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||||          
--------------------------------------------tggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacaggtaagAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                      ||| | |||||  |   ||  || || |      |||   ||| | |     |  |    |  |  |||   | |    ||  | |  | |      | |  |||  ||   || |     ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||            
-----------------------------------------------------agatggagctgttgg---cagctcgttgattcttgttcccgtggtgtttgttgttcgtctcg--gctgacgccgttgctgttgatgtggcgt---tgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                        ||| ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||               
---------------------------------------tagggtggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacagGTAAGAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                         | |||| | | |     | ||    ||  ||    | |||||||  |   |||  | |   |    | || |   |   ||  ||  |||  | | |  |||  ||    |   | | | ||     |  ||||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||               
-------------------------------------------------------tgcctgctttgatatcg--tgctgctgggctaacgaggatggagctttgg--cggctccgtttgttgttcagctggatgacgtggttattgc--attgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAA-ATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggt--ttgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC--
                                                                                   ||    || |||   | |  ||||    |       | | |||  |  ||   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||||   
---------------------------------------------------------------------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaag-

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtt--tgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                                              ||   ||    || |||   | |  ||||    |       | | |||  ||  |   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||   
----------------------------------------------------------------------------tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAG-CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC--
                                                                             | | ||     | |   |  |    | |||  | ||| |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||||   
----------------------------------------------------------------------------ttgttagttatctgctattttacactatctt--gtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaag-

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                            | ||   |     | |||   |    |    | || | ||| | | |   | || |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||   
------------------------------------------------------------gttgattgttagttatctgctattttacactatcttgtgcttatcctattacctta-------------ttacataatctaacctgttgtcgtggttgactttaatgtgtaagGTAAG-CCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA---

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC---
                                                                  | | |  |||  ||  || |  | |||||| |  |    ||   |  |||       ||     ||||  ||||||  ||  |  | |  |  ||||| |       |||||   |  || ||||| ||||||||||| || |||||||| || ||||||| |||  ||||||| |||||||||| ||| ||||| || || || |||||    
-----------------------------------------------------------------catagtattttaatt--ggggtttgcagctg-atttgtcttttatacatgatcatatgttgaccctgtt--gttttttttgttctttta--ttgttgtcatt-----tgtagG--TAAGAT-ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG

upper sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtt--tttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC
                                                                         ||| |||  | ||  |   | |  |  |||  |      ||  ||  |  | | ||||  | | ||  ||| | |        | || |  |  |    | | |  |   |  |      ||||||| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  | 
------------------------------------------------------------------------ttttgtttttgaagtttgaggtttta--tcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGA----AATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|18360219|gb|BJ192281.1|BJ192281

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|67573107|gb|BJ945931.1|BJ945931

EST:     GCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: GCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18326626|gb|BJ158625.1|BJ158625

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18327910|gb|BJ159914.1|BJ159914

EST:     GACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18327983|gb|BJ159987.1|BJ159987

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18373736|gb|BJ205314.1|BJ205314

EST:     AGCTTCGTGCCCCTCGACCTCGTGCTTCTC---G                         G---AGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: AGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18326513|gb|BJ158512.1|BJ158512

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162265436|gb|FC440762.1|FC440762

EST:     ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162229259|gb|FC405346.1|FC405346

EST:     GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|67571629|gb|BJ944453.1|BJ944453

EST:     CCCTCGAACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CCCTCG-ACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18352513|gb|BJ184567.1|BJ184567

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162204085|gb|FC379454.1|FC379454

EST:     TGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: TGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162259518|gb|FC435445.1|FC435445

EST:     CTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18370466|gb|BJ202068.1|BJ202068

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|67719664|gb|BJ969923.1|BJ969923

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162215362|gb|FC391858.1|FC391858

EST:     CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|208382584|gb|DC923212.1|DC923212

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|208391982|gb|DC941830.1|DC941830

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|208347049|gb|DC909347.1|DC909347

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18326583|gb|BJ158582.1|BJ158582

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|18368398|gb|BJ200483.1|BJ200483

EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|162272675|gb|FC448301.1|FC448301

EST:     TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

EST: gi|208356746|gb|DC906408.1|DC906408

EST:     ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         GACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA
genomic: ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 33 (upstream exon), 31 (downstream exon)
Score: 37

GTTAGGGTTTGGAGCTCTAAGACCATGGTCTGTTGCGTCAATCTCTCTTTCACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... aaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC