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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                         |    |   |  || ||  |||| | ||     |  ||||||   |  |    |  | |  |  |  ||   |          || |||   ||    | ||| |   ||   |||||||||||| ||||| |||||||| || || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||   
-------------------------------------------------------------------------taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaa---ggaatcgcatgatgcttatggtttgt--gtttgtttgatttggtgtaggtaagGTAAG--CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG---

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcagg-agaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                      ||| |  | |   |  || ||  |||| | ||     |  ||||||   |  |    |  | |  |  |  ||   |          || |||   ||    | ||| |   ||   |||||||||||| ||||| |||||||| || || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |        
---------------------------------------------------------------------ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaa---ggaatcgcatgatgcttatggtttgt--gtttgtttgatttggtgtagGTAAGGTAAG--CCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC--------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                          |||||  |   | | |   | |   |      | |||| |  || | ||    | ||   |   || | ||  | || || || | ||        |         || | ||    ||||  ||||  ||||||||||| ||||| || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||                  
--------------------------------------------------------atgtgctcgattgcgcgtgcatat---ggtctcgccgctgtatatcgggtt----gttggtagtcgctgatgtgaggtttgtgtt-cgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAA-ATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                            ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||||                
--------------------------------------------tggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacaggtaagAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                      ||| | |||||  |   ||  || || |      |||   ||| | |     |  |    |  |  |||   | |    ||  | |  | |      | |  |||  ||   || |     ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||                  
-----------------------------------------------------agatggagctgttgg---cagctcgttgattcttgttcccgtggtgtttgttgttcgtctcg--gctgacgccgttgctgttgatgtggcgt---tgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC------------------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                        ||| ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||                     
---------------------------------------tagggtggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacagGTAAGAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                         | |||| | | |     | ||    ||  ||    | |||||||  |   |||  | |   |    | || |   |   ||  ||  |||  | | |  |||  ||    |   | | | ||     |  ||||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||                     
-------------------------------------------------------tgcctgctttgatatcg--tgctgctgggctaacgaggatggagctttgg--cggctccgtttgttgttcagctggatgacgtggttattgc--attgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAA-ATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggt--ttgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                                   ||    || |||   | |  ||||    |       | | |||  |  ||   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||||| ||    
---------------------------------------------------------------------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaag-

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtt--tgtttagtttttcatgcccac-taaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                              ||   ||    || |||   | |  ||||    |       | | |||  ||  |   || | |  | ||    | |  |   | |||  ||   || ||| | ||| |  |||||| |||||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| |||         
----------------------------------------------------------------------------tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAG-CCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA---------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                             | | ||     | |   |  |    | |||  | ||| |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| ||||| ||    
----------------------------------------------------------------------------ttgttagttatctgctattttacactatctt--gtgcttatcctattaccttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaag-

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                            | ||   |     | |||   |    |    | || | ||| | | |   | || |             ||   || | |  | ||    |     ||  | |  ||   || ||| | ||| || |||||| |||||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| |||         
------------------------------------------------------------gttgattgttagttatctgctattttacactatcttgtgcttatcctattacctta-------------ttacataatctaacctgttgtcgtggttgactttaatgtgtaagGTAAG-CCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA---------

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                  | | |  |||  ||  || |  | |||||| |  |    ||   |  |||       ||     ||||  ||||||  ||  |  | |  |  ||||| |       |||||   |  || ||||| ||||||||||| || |||||||| || ||||||| |||  ||||||| |||||||||| ||| ||||| || || || ||||| |||   
-----------------------------------------------------------------catagtattttaatt--ggggtttgcagctg-atttgtcttttatacatgatcatatgttgaccctgtt--gttttttttgttctttta--ttgttgtcatt-----tgtagG--TAAGAT-ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG---

upper sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtt--tttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                                                                         ||| |||  | ||  |   | |  |  |||  |      ||  ||  |  | | ||||  | | ||  ||| | |        | || |  |  |    | | |  |   |  |      ||||||| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  |       
------------------------------------------------------------------------ttttgtttttgaagtttgaggtttta--tcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGA----AATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265436|gb|FC440762.1|FC440762
EST:     ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: ATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: GCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18370466|gb|BJ202068.1|BJ202068
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: ACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326626|gb|BJ158625.1|BJ158625
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18326583|gb|BJ158582.1|BJ158582
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     AGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAG                         AATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGA
genomic: AGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGgtatgctggc ... gtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGA
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     TGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: TGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18368398|gb|BJ200483.1|BJ200483
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|67573107|gb|BJ945931.1|BJ945931
EST:     GCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: GCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18352513|gb|BJ184567.1|BJ184567
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|18327983|gb|BJ159987.1|BJ159987
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: TGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTCGGAGGACCAG                    
genomic: CACGGCCTCTATTGCCAGCTTCGTGCCCCTCGACCTCGTGCTTCTC---GG---AGgtatgctggc ... gtagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG
                    cactaaa  putative branch site (score: 2)
     ttagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG