1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatagtacgaattagtattatctaactaaagattactcaagtgttggtgagtggattgctggacggggttcacacagtattaagtgcatttcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCGCTTTTCAAGAGACCACAGTTTCTCCTGCGAACTTCATTCTTCCACTAT
species | Physcomitrella patens |
transcript | PP1S450_21V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|208362694|gb|DC931059.1|DC931059
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|208354190|gb|DC902446.1|DC902446
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162234870|gb|FC410643.1|FC410643
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100423621|gb|BY958333.1|BY958333
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100386209|gb|BY987876.1|BY987876
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100379688|gb|BY949894.1|BY949894
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATTGCAGATCTGCAGCTCTTCGTGCCEST: gi|18348143|gb|BJ180190.1|BJ180190
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162163264|gb|FC339382.1|FC339382
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100369089|gb|BY985015.1|BY985015
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162218488|gb|FC395065.1|FC395065
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100363338|gb|BY984475.1|BY984475
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|208400620|gb|DC904596.1|DC904596
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100388664|gb|BY970812.1|BY970812
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100370598|gb|BY948423.1|BY948423
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|208344405|gb|DC912764.1|DC912764
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100436499|gb|BY961248.1|BY961248
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162268623|gb|FC443677.1|FC443677
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162227018|gb|FC403362.1|FC403362
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162265941|gb|FC442944.1|FC442944
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|100357521|gb|BY946437.1|BY946437
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|162176323|gb|FC353508.1|FC353508
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCEST: gi|208345086|gb|DC909448.1|DC909448
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
EST: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTG GTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
genomic: TTCCTGCCAAACCCAAGGCTCCGGAGGGTACACCCAGAATTTCTCCATTGgtgagagcct ... tcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCC
ggtgagtggattgctggacggggttcacacagtattaagtgcatttcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCGCTTTTCAAGAGACCACAGTTTCTCCTGCGAACTTCATTCTTCCACTAT
agtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagtacgaattagtattatctaactaaagattactcaagtgttggtgagtggattgctggacggggttcacacagtattaagtgcatttcggctgcagGTAATGCCTGCGAGGCCACGAAGAAATCGCAGATCTGCAGCTCTTCGTGCCGCTTTTCAAGAGACCACAGTTTCTCCTGCGAACTTCATTCTTCCACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgga