1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgtgtgggggggggggtgtgtgtgtgtgtgtgtgtatgttttccggggattggaagcgtcgtttgtaatatcagaggttgtggtgtttcttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGGACTTTCTTAGAGTGGGTGAATTTGGAATTTGGAGCGTGCCCGTGAAGTG
species | Physcomitrella patens |
transcript | PP1S42_89V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCC-ATTTTAACGCCATCTGTCCCTTACATCAG CTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGGEST: gi|18370123|gb|BJ201725.1|BJ201725
genomic: CGGCCAATTTTAACGCCATCTGTCCCTTACATCAGgtatctgccg ... cttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGG
EST: TCACGACTCATTCGCCGGCCAATTTTAACGCCATCTGTCCCTTACATCAG CTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGGEST: gi|18346330|gb|BJ178373.1|BJ178373
genomic: TCACGACTCATTCGCCGGCCAATTTTAACGCCATCTGTCCCTTACATCAGgtatctgccg ... cttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGG
EST: TCACGACTCATTCGCCGGCCAATTTTAACGCCATCTGTCCCTTACATCAG CTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGG
genomic: TCACGACTCATTCGCCGGCCAATTTTAACGCCATCTGTCCCTTACATCAGgtatctgccg ... cttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGG
cggggattggaagcgtcgtttgtaatatcagaggttgtggtgtttcttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGGACTTTCTTAGAGTGGGTGAATTTGGAATTTGGAGCGTGCCCGTGAAGTG
tgtttctt CT-rich tract
tttgtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgtgggggggggggtgtgtgtgtgtgtgtgtgtatgttttccggggattggaagcgtcgtttgtaatatcagaggttgtggtgtttcttggtgcagCTTAGTTTCTCTTTATCAGGGACTTGAGGGAGAAAGAAGCCGTCGTTGCGGACTTTCTTAGAGTGGGTGAATTTGGAATTTGGAGCGTGCCCGTGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG