1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcctagtttgtgtgggttttgaagggaagcgacggttctctgccaagttggtgagtcgcacatctgattggtgccatttccattgtctgtggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGAGGGCGTTGTGCAGAGGAGATGGCGATCGAGGGGTCGGGCGTAGAAACC
species | Physcomitrella patens |
transcript | PP1S42_185V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|208388653|gb|DC941494.1|DC941494
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|18353560|gb|BJ185615.1|BJ185615
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|18364787|gb|BJ196860.1|BJ196860
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|100413380|gb|BY956643.1|BY956643
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|18372195|gb|BJ203797.1|BJ203797
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGEST: gi|18349250|gb|BJ181299.1|BJ181299
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
EST: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAG GCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
genomic: TTACCTGAGATCATCGACTGGTCTGGAGTGTTGTCAATGGTAGAGGAAAGgtgcggatct ... ggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTG
agttggtgagtcgcacatctgattggtgccatttccattgtctgtggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGAGGGCGTTGTGCAGAGGAGATGGCGATCGAGGGGTCGGGCGTAGAAACC
atctgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctagtttgtgtgggttttgaagggaagcgacggttctctgccaagttggtgagtcgcacatctgattggtgccatttccattgtctgtggtgttgcagGCGTAGAATCCTGAGGTGGCGTGGAACATTTGATCTTTGAGTGCGAGTTTGAGGGCGTTGTGCAGAGGAGATGGCGATCGAGGGGTCGGGCGTAGAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG