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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcttctagttgataggatttcaaattttgggcgttgtaagtcgtatctacaatttgagcatcgcccaaggtaactgataagatttattcgctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCAGCTAGTTCTGCATTTCCGTCTGGTCCAAATATATCGGTTCATCAACGTC

Basic information

species Physcomitrella patens
transcript PP1S42_16V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100395346|gb|BY953691.1|BY953691
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|162231292|gb|FC406533.1|FC406533
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100426955|gb|BY977448.1|BY977448
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|18328243|gb|BJ160247.1|BJ160247
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|208363997|gb|DC939590.1|DC939590
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|208376982|gb|DC911050.1|DC911050
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGTTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100423213|gb|BY958195.1|BY958195
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100365178|gb|BY966849.1|BY966849
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100411477|gb|BY974655.1|BY974655
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100406431|gb|BY955623.1|BY955623
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100444442|gb|BY964140.1|BY964140
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|7207567|gb|AW561615.1|AW561615
EST:     ATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: ATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100448633|gb|CJ972932.1|CJ972932
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|18367244|gb|BJ199325.1|BJ199325
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100387757|gb|BY951757.1|BY951757
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|18353836|gb|BJ185891.1|BJ185891
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|18356924|gb|BJ188983.1|BJ188983
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
EST: gi|100403625|gb|BY955020.1|BY955020
EST:     GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATC                         GATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA
genomic: GGCCTGAAGTCCGGCGTCACTACCAGCTCAAATTTTACCAGCGGTACATCgtacgtgcac ... gctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctacaatttgagcatcgcccaaggtaactgataagatttattcgctggtacagGATCCAGAGCTTGAAGTGGACTCTCTTTCAAGCGTGAAAAACAGCTCCTCAGCTAGTTCTGCATTTCCGTCTGGTCCAAATATATCGGTTCATCAACGTC
                           aactgat  putative branch site (score: 3)
                              tgataagatttatt  TA-rich tract