Sequence
atgc intronic sequence ATGC exonic sequence...ctcacgttcattgccacagcttcactatatttcctttctgggaaattgtagctgtaaccgaagctaagaggacccatttttctctggtactcattcgcagGAGGGTTATGTTGTTCCTGCTGACTCCGGATGCCAATCTGCAGCGCCAAATGGGAGGTTGGCGAAGTCCATTGTCTTCCACGATGGGCGTCTGGTGCAAT
Basic information
species | Physcomitrella patens |
transcript | PP1S42_150V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208363611|gb|DC939788.1|DC939788EST: TTGGAGTCGGAGACAGAAAGCACGACCATCCATTCTTGACCTACTGCAAG GAGGGTTATGTTGTTCCTGCTGACTCCGGATGCCAATCTGCAGCGCCAANT
genomic: TTGGAGTCGGAGACAGAAAGCACGACCATCCATTCTTGACCTACTGCAAGgtgctttgat ... tcattcgcagGAGGGTTATGTTGTTCCTGCTGACTCCGGATGCCAATCTGCAGCGCCAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtagctgtaaccgaagctaagaggacccatttttctctggtactcattcgcagGAGGGTTATGTTGTTCCTGCTGACTCCGGATGCCAATCTGCAGCGCCAAATGGGAGGTTGGCGAAGTCCATTGTCTTCCACGATGGGCGTCTGGTGCAAT
ctgtaac putative branch site (score: 3)
ctcattc putative PPT
atttttct TA-rich tract