1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aggactcgaatttcagtttttcttggattacgtattcattgttgtcctcgtgtgcatttttggagtaaatgctcacactcggttgtatggttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAGAGGCACTCACCATGACTACCTTTCTGGACATGCTAAATGACGCCCCGCG
species | Physcomitrella patens |
transcript | PP1S429_32V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGG ATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAGEST: gi|18343304|gb|BJ175342.1|BJ175342
genomic: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGGgtaccgcgga ... ttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
EST: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGG ATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
genomic: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGGgtaccgcgga ... ttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
cctcgtgtgcatttttggagtaaatgctcacactcggttgtatggttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAGAGGCACTCACCATGACTACCTTTCTGGACATGCTAAATGACGCCCCGCG
tgctcac putative branch site (score: 2)
attttt TA-rich tract