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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggactcgaatttcagtttttcttggattacgtattcattgttgtcctcgtgtgcatttttggagtaaatgctcacactcggttgtatggttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAGAGGCACTCACCATGACTACCTTTCTGGACATGCTAAATGACGCCCCGCG

Basic information

species Physcomitrella patens
transcript PP1S429_32V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18355384|gb|BJ187443.1|BJ187443
EST:     GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGG                         ATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
genomic: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGGgtaccgcgga ... ttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
EST: gi|18343304|gb|BJ175342.1|BJ175342
EST:     GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGG                         ATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG
genomic: GCTCACTGGCCAGGTGGAATGGATTGTTGTGCGTCAGGACGATCCTGAGGgtaccgcgga ... ttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcgtgtgcatttttggagtaaatgctcacactcggttgtatggttttatgcagATGGCGAAGGACAGAACCACTTATTTGGAAGTTCAGCTGAGGAGGTTTCAGAGGCACTCACCATGACTACCTTTCTGGACATGCTAAATGACGCCCCGCG
                        tgctcac  putative branch site (score: 2)
          attttt  TA-rich tract