1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctatcttctaaaaactcaacgataaatagaggagatgatgtacatgcgcacagttgtgcagttggaccgctaacaagtgttaccttgttgtatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCAAAGTCAAGAACGGAGGGGACAGTTAACCAAGATTGAGAGGAGGATGGT
species | Physcomitrella patens |
transcript | PP1S429_31V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|18365459|gb|BJ197535.1|BJ197535
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|100417874|gb|BY993227.1|BY993227
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|100429868|gb|BY978129.1|BY978129
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|100384207|gb|BY969338.1|BY969338
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|100387837|gb|BY970582.1|BY970582
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCEST: gi|67577673|gb|BJ949840.1|BJ949840
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
EST: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAG GTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
genomic: GGAGCTTTAGCTGAAGGCGTGCGCTGGTGGAGATTGTCGGGCTTTGTTAGgtaagtgggt ... tatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTC
gcgcacagttgtgcagttggaccgctaacaagtgttaccttgttgtatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCAAAGTCAAGAACGGAGGGGACAGTTAACCAAGATTGAGAGGAGGATGGT
cgctaac putative branch site (score: 12)
ttgttgtatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcttctaaaaactcaacgataaatagaggagatgatgtacatgcgcacagttgtgcagttggaccgctaacaagtgttaccttgttgtatttattagGTGTCAAGGTTTGGCGATTATTCGAGAACAGGTTAAACATGGGACTCATTCAAAGTCAAGAACGGAGGGGACAGTTAACCAAGATTGAGAGGAGGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - tacatgc