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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtcgtatgtgtcttcatcattgctccgcagaaaaattgtggttctgttgacatcttctttgctggcaagtctgaacatggtgtggggaatgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGATTTTGCCAAAGACTCTACGGAAAATTCAAGCGAAGTGCAGGGACTAAGCA

Basic information

species Physcomitrella patens
transcript PP1S426_2V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162169444|gb|FC345800.1|FC345800
EST:     GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGC                         GTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
genomic: GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGCgtatgtcaca ... tgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
EST: gi|162200182|gb|FC376054.1|FC376054
EST:     GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGC                         GTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
genomic: GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGCgtatgtcaca ... tgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
EST: gi|18358091|gb|BJ190150.1|BJ190150
EST:     GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGC                         GTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
genomic: GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGCgtatgtcaca ... tgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
EST: gi|162236712|gb|FC413391.1|FC413391
EST:     GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGC                         GTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT
genomic: GATTTGCGGACTTGGAGTTCAACGAAGCAACTGCCGACATACTCCGAAGCgtatgtcaca ... tgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgacatcttctttgctggcaagtctgaacatggtgtggggaatgatatccagGTTACAGCAGGGCGAATATCGCAGCTTAGATACAAGGGTAATAATTTTGATTTTGCCAAAGACTCTACGGAAAATTCAAGCGAAGTGCAGGGACTAAGCA
 tgttgac  putative branch site (score: 3)
                                           aatgatat  TA-rich tract