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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtggaagtggaaatacaagacgttgatcctttattgatttttgcttcgaatttcaaggcactcgatctttactgtaatttccgtgtttttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTTTCGTCGGTGAACATCCTGGGCGCCACAGCATTTGAAACCTCCG

Basic information

species Physcomitrella patens
transcript PP1S425_16V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348546|gb|DC905825.1|DC905825
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|208384789|gb|DC907402.1|DC907402
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|100358086|gb|BY965465.1|BY965465
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|162186160|gb|FC361364.1|FC361364
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|100442509|gb|BY963203.1|BY963203
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|18355551|gb|BJ187610.1|BJ187610
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|18350239|gb|BJ182290.1|BJ182290
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
EST: gi|162265882|gb|FC442885.1|FC442885
EST:     GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTC                         AGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT
genomic: GTCTTGATCGAGGATGTGAGCTGTAACGTCTTCATTTGCGCCCCGGATTCgtgagtttct ... tttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcgaatttcaaggcactcgatctttactgtaatttccgtgtttttgttgcagAGAACAGTCAGGCGTGTCTCATAGCATTACACACAGGAGCGTTTTAGAGGTTTCGTCGGTGAACATCCTGGGCGCCACAGCATTTGAAACCTCCG
                                           tttttgtt  CT-rich tract
      aatttcaa  TA-rich tract