1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccgaaacttcttaaatggatgactcttgccagggtagttatggattaggatttgtttatttacttatttcattttgagcttggtatgttctgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAACTTGTTCTGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTG
species | Physcomitrella patens |
transcript | PP1S41_304V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCATCAGCCGCNTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162206214|gb|FC382284.1|FC382284
genomic: CAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|208398384|gb|DC916467.1|DC916467
genomic: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67719834|gb|BJ970093.1|BJ970093
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|37844913|gb|BJ602921.1|BJ602921
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67692429|gb|BJ952662.1|BJ952662
genomic: CAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67569183|gb|BJ942007.1|BJ942007
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|19782800|gb|BQ039918.1|BQ039918
genomic: CATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67695840|gb|BJ956073.1|BJ956073
genomic: CCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|37822492|gb|BJ580558.1|BJ580558
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18328502|gb|BJ160507.1|BJ160507
genomic: CACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|37839676|gb|BJ597684.1|BJ597684
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CACTCAGCCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAEST: gi|18362382|gb|BJ194452.1|BJ194452
genomic: CACTCAG-CCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18374348|gb|BJ205926.1|BJ205926
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162245640|gb|FC423323.1|FC423323
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: AGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18343896|gb|BJ175934.1|BJ175934
genomic: AGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18336730|gb|BJ168753.1|BJ168753
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: ACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162206556|gb|FC382925.1|FC382925
genomic: ACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67572959|gb|BJ945783.1|BJ945783
genomic: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162279100|gb|FC455439.1|FC455439
genomic: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|19790377|gb|BQ041841.1|BQ041841
genomic: CTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: TCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67694866|gb|BJ955099.1|BJ955099
genomic: TCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: TTCCCTCACGTCGAGCCCGCANTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67578315|gb|BJ950482.1|BJ950482
genomic: TTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: GCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162238058|gb|FC414248.1|FC414248
genomic: GCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: GTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67572468|gb|BJ945292.1|BJ945292
genomic: GTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18356295|gb|BJ188354.1|BJ188354
genomic: CATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|37828652|gb|BJ586664.1|BJ586664
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67728094|gb|BJ978353.1|BJ978353
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162232853|gb|FC407506.1|FC407506
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18343290|gb|BJ175328.1|BJ175328
genomic: CAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|37833227|gb|BJ591239.1|BJ591239
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|18365237|gb|BJ197311.1|BJ197311
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|19782143|gb|BQ039816.1|BQ039816
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67696341|gb|BJ956574.1|BJ956574
genomic: CCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162203716|gb|FC378591.1|FC378591
genomic: CGCAGCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: GCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|162238059|gb|FC414249.1|FC414249
genomic: GCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: GTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|19780736|gb|BQ039607.1|BQ039607
genomic: GTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: CCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|19789619|gb|BQ041413.1|BQ041413
genomic: CCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: TTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAAEST: gi|67571525|gb|BJ944349.1|BJ944349
genomic: TTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAA
EST: ATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAEST: gi|162203717|gb|FC378592.1|FC378592
genomic: ATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCAT-Ggtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAA
EST: GCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATG GCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGAGTTCAGAA
genomic: GCATCAGCCGCCTCTTTCCCTCACGTCGAGCCCGCACTCAGCCATGgtgggtttcc ... tgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAG-GTTCAGAA
taggatttgtttatttacttatttcattttgagcttggtatgttctgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAACTTGTTCTGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTG
tttgtttatttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgaaacttcttaaatggatgactcttgccagggtagttatggattaggatttgtttatttacttatttcattttgagcttggtatgttctgtatttcagGCGTCCGAAAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAACTTGTTCTGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC