1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgctatgcgttatttggtggatgttcctggacgaagagagtgcggattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
species | Physcomitrella patens |
transcript | PP1S41_163V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTG AGCGGATTACCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|208397811|gb|DC912020.1|DC912020
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTG AGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|100443634|gb|BY963731.1|BY963731
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTG AGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|18372803|gb|BJ204405.1|BJ204405
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA--A-G---- --CGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|162180390|gb|FC355811.1|FC355811
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTG AGCGGATTACCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|100420676|gb|BY993459.1|BY993459
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTG AGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
genomic: ACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAGTGTGgtaagcatgt ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
gattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
cgctaac putative branch site (score: 2)
ttattttct putative PPT
taacatattattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctatgcgttatttggtggatgttcctggacgaagagagtgcggattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT