1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgctatgcgttatttggtggatgttcctggacgaagagagtgcggattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
species | Physcomitrella patens |
transcript | PP1S41_163V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA AGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAG
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|208397811|gb|DC912020.1|DC912020
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAGTAAEST: gi|100443634|gb|BY963731.1|BY963731
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTT---G-AAgtaagtgtgg ... tttctgc
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA GEST: gi|100443634|gb|BY963731.1|BY963731
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA GEST: gi|100443634|gb|BY963731.1|BY963731
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA GEST: gi|162180390|gb|FC355811.1|FC355811
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA GEST: gi|162180390|gb|FC355811.1|FC355811
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA GEST: gi|162180390|gb|FC355811.1|FC355811
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
EST: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAA G
genomic: GAAGTGAAGACGACTCAGAGGAGCCACGGATCCCCGAGAATGAGGTTGAAgtaagtgtgg ... tttctgccag-
gattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
cgctaac putative branch site (score: 2)
ttattttct putative PPT
taacatattattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctatgcgttatttggtggatgttcctggacgaagagagtgcggattaatacataagtatcttggattttgcgctaacatattattattttctgccagAGCGGATTATCGCCTTCAGGGCGAATTGTTAACAGCGAGGAAAGTGCGCAGAGTGAGCTTCCTGTCCAGCCGTATGCCTCCCCTTCCAGAGAGTACTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT