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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttccatgtaccctctctgtattagcagtgtagaagttcgtgcagtcacctggttgcttgtggcctcagacttttgtgatactcaacactgaatgctgaagctattttatgaattgtccttcatctcttgtttgcagATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTCCAAGGTCGACCGGAAGTTGTTCGTGCCAACCACGGGCTTCGCTTACAACGACGTCCC

Basic information

species Physcomitrella patens
transcript PP1S41_157V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18357396|gb|BJ189455.1|BJ189455
EST:     GTGGCACTGCCATGGGGCTAACTACGAGGAGCTTGTCTCGAATTTGCAGA                         ATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTCC
genomic: GTGGCACTGCCATGGGGCTAACTACGAGGAGCTTGTCTCGAATTTGCAGAgttggttcca ... ttgtttgcagATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTCC
EST: gi|18355176|gb|BJ187235.1|BJ187235
EST:     GTGGCACTGCCATGGGGCTAACTACGAGGAGCTTGTCTCGAATTTGCAGA                         ATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTC
genomic: GTGGCACTGCCATGGGGCTAACTACGAGGAGCTTGTCTCGAATTTGCAGAgttggttcca ... ttgtttgcagATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacactgaatgctgaagctattttatgaattgtccttcatctcttgtttgcagATCGTGGAATTTTGACTTCGTTGGATGCGGCGGCTGCAATGTCCAAGGTCGACCGGAAGTTGTTCGTGCCAACCACGGGCTTCGCTTACAACGACGTCCC
                                  tccttcatctcttgtt  CT-rich tract
                    tattttatgaattgt  TA-rich tract