1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgggctgaggctattttgcagagcttgccatcccgtttggtggtcctgcagggattcgaaactcaacctgacttctattgaatgagagcattacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAGAAATTCTATTCCATCATGTATATTGTGGAGAACAAAGGGCCGGCCATAG
species | Physcomitrella patens |
transcript | PP1S41_115V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTNNNNNNNN GAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAGEST: gi|100383771|gb|BY969300.1|BY969300
genomic: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTAAAAAAAAgtaagtacga ... attacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAG
EST: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTNNNNNNNN GAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAGEST: gi|100439700|gb|BY962064.1|BY962064
genomic: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTAAAAAAAAgtaagtacga ... attacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAG
EST: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTNNNNNNNN GAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAG
genomic: TCTGCGACTGGGTTTGTATGCTGCTGGAGTTTGGATGCTGCTAAAAAAAAgtaagtacga ... attacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAG
cctgcagggattcgaaactcaacctgacttctattgaatgagagcattacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAGAAATTCTATTCCATCATGTATATTGTGGAGAACAAAGGGCCGGCCATAG
acctgac putative branch site (score: 3)
ttacttc putative PPT
tattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggctgaggctattttgcagagcttgccatcccgtttggtggtcctgcagggattcgaaactcaacctgacttctattgaatgagagcattacttcagGAATTGAAGACAACGGAGCTGGAGATTGTGGGTTAGGATTGACGTTGTGAGAAATTCTATTCCATCATGTATATTGTGGAGAACAAAGGGCCGGCCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - tcctgca