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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgtcctaattccagtgggccctttttattctaccatctttgatgcactttgcaaatgacatgtttagtacgtagtctattcagtttttaaaagtcacctcccacatttttcttggcactggcctccgtcatttcaataatttgaaacaatcagtcgccaattctaatttttgaagacctgtttctgcagGGATTCTGGATTGTAAGACAGAGTATAGGTACTACGCCTTGCATTCTTGGCAAACCAGTAGATTGTACATATCATCGCGGTCCGAATTACCTTGAG

Basic information

species Physcomitrella patens
transcript PP1S416_13V6.2
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatttgaaacaatcagtcgccaattctaatttttgaagacctgtttctgcagGGATTCTGGATTGTAAGACAGAGTATAGGTACTACGCCTTGCATTCTTGGCAAACCAGTAGATTGTACATATCATCGCGGTCCGAATTACCTTGAG
                          ttctaat  putative branch site (score: 2)
                                          cctgtttct  putative PPT
                        aattctaatttttgaa  TA-rich tract