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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaggcgtgaagtggaagctttgagagcgattagatggatgcagaggttgaacagcagctgtgtgctaattatgatcgatatttttgcgacttacgcagATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCACGAATGGCAGGCAGCAGTCGATATCAACAAGTTGCCC

Basic information

species Physcomitrella patens
transcript PP1S414_12V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359309|gb|BJ191369.1|BJ191369
EST:     CAGCGTCGCGATGGATCCTCAACACCAAGCAGTACGTACTCCTCAACGTG                         ATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCAC
genomic: CAGCGTCGCGATGGATCCTCAACACCAAGCAGTACGTACTCCTCAACGTGgtgattcttt ... acttacgcagATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCAC
EST: gi|18373904|gb|BJ205482.1|BJ205482
EST:     CAGCGTCGCGATGGATCCTCAACACCAAGCAGTACGTACTCCTCAACGTG                         ATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCAC
genomic: CAGCGTCGCGATGGATCCTCAACACCAAGCAGTACGTACTCCTCAACGTGgtgattcttt ... acttacgcagATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttgaacagcagctgtgtgctaattatgatcgatatttttgcgacttacgcagATTTATGCCAAAGAGCAAAAGGACGTTCCAGACTGGATGAAGGCTCACCACGAATGGCAGGCAGCAGTCGATATCAACAAGTTGCCC
                                            gacttac  putative branch site (score: 2)
                      taattatgat  TA-rich tract