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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagttctgctttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT

Basic information

species Physcomitrella patens
transcript PP1S40_297V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G144387_T03 (Zea mays), 3'ss of exon 2
---tgagttctgctttgga-aatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT
   |   |  ||    | | ||||    | ||   ||    |    |       | |   ||  | |  |  | |      || | |||  || | |    ||||||| | |||   ||     ||  ||| |||||  | |||||       |  ||||||||||||||  ||||||||||||| ||||| || |||||||||
ttctccctattgacaggaataattagaattctagagtagtgttcccatccagactgactatttttgtcaaattaattttattgtactgaaattattg----cagTAAGTTGCAGTCTGAGTCTGTCAAGGATGCCATCTCCCAGATTGTTGGGGATGCCAAGGAGAAGAATAGGAAGTTCACTGAGACTGTGGAACTTCAGATT

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G170561_T01 (Zea mays), 3'ss of exon 3
tgagttctgct-ttgg-aaatttagttc---ctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT---
  | |  | || |||| ||   || ||     | | | |  |||||        | ||| ||  ||   |  || |   |    |     |  ||      |||||||| | |||   || || |||  ||| |||||  | |||||       |  |||||| |||| |   ||||||||||||| ||||| ||||||||||||   
caattcttcctgttggcaagagtactttgaattctagagtattgttcccatccagatagatt--atccctgcctaataaattctgcccattgattat---tgcagTAAGTTGCAGTCTGAGGTTCTCAAGGATGCCATCTCCCAGATAGTTCAAGATGCCAAGAAGAATA---GGAAGTTCACTGAGACTGTTGAGCTTCAGATTAGT

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G074769_T01 (Zea mays), 3'ss of exon 1
----------------------------------------------------------------------------tgagttctgctttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagct-gacggac-------gtggaatgattttttcggac--------gcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT---
                                                                                || ||| ||    | ||  | |   |||   |    ||     || |   || |  ||   | |  ||  ||        |   ||| | || | |  |         ||||||||||  ||  ||| || |||  ||| | | |  | |||||       |  |||||| |||| |   ||||||||||||| ||||| ||||||||||||   
gtgagatagattcaggttcttgtctcgacacatgagatggattcacgtagcttgcttattattattgattattctactgtttttgccttctgcaattcttcctattggcatgagtatttggaattctagagtattgttcccatccagatagattatctctgcctaataaattctgcccattgattattgcagTAAGCTGGAGTCCGAGGTTCTCAAGGATGTCGTCTCCCAGATAGTTCAGGATGCCAAGAAGAATA---GGAAGTTCACTGAGACTGTTGAGCTTCAGATTAGT

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G181194_T01 (Zea mays), 3'ss of exon 2
---tgagttctgct--ttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT---
   |   | ||  |    |||   || |    | | | |  |||||        | ||| ||  || | |  || |   |  |      |||  ||     |||||||| | ||   |||  | |||  |||   |||  | |||||       |  |||||| |||| |   ||||||||||||| ||||| ||||||||||||   
caattcttcctattggcaggagtatttggaattctagagtattgttcccatccagatagatt--atctctgcctaataaat-tatgcccattgatt--attgcagTAAGTTGCATTCCGAGCTTCTCAAGGATTGCATCTCCCAGATAGTTCAGGATGCCAAGAAGAATA---GGAAGTTCACTGAGACTGTTGAGCTTCAGATTAGT

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G369991_T01 (Zea mays), 3'ss of exon 1
------tgagttctgctttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT---
      |   |  ||   ||   |||| |      | | |  |||||        | ||| ||  || | |  || |   |    |     |  ||      ||||||||||  ||  ||| || |||  ||| | | |  | |||||       |  |||||| |||| |   ||||||||||||| ||||| ||||||||||||   
caattcttcctattggcatgagtatttggaattc-tagagtattgttcccatccagatagatt--atctctgcctaataaattctgcccattgattat---tgcagTAAGCTGGAGTCCGAGGTTCTCAAGGATGTCGTCTCCCAGATAGTTCAGGATGCCAAGAAGAATA---GGAAGTTCACTGAGACTGTTGAGCTTCAGATTAGT

upper sequence: PP1S40_297V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM5G862017_T01 (Zea mays), 3'ss of exon 8
---tgagttctgct--ttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT---
   |   | ||  |    |||   || |    | | | |  |||||        | ||| ||  || | |  || |   |  |  |   |||  ||     |||||||| | |||  ||| || |||  ||| |||||  | |||||       |  |||||| |||| |   ||||||||||||| ||||| ||||||||||||   
caattcttcctattggcaggagtatttggaattctagagtattgttcccatccagatagatt--atctctgcctaataaat-tctacccattgatt--attgcagTAAGTTGCAGTCCGAGGTTCTCAAGGATGCCATCTCCCAGATAGTTCAGGATGCCAAGAAGAATA---GGAAGTTCACTGAGACTGTTGAGCTTCAGATTAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353843|gb|BJ185898.1|BJ185898
EST:     AGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: AGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162208146|gb|FC384588.1|FC384588
EST:     TCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|208382464|gb|DC927998.1|DC927998
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18345258|gb|BJ177300.1|BJ177300
EST:     GTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|37835160|gb|BJ593172.1|BJ593172
EST:     TACAGTTAGTTNTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCNTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|208399927|gb|DC904981.1|DC904981
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18353686|gb|BJ185741.1|BJ185741
EST:     AGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: AGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18366048|gb|BJ198126.1|BJ198126
EST:     GCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162207625|gb|FC384078.1|FC384078
EST:     CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18326967|gb|BJ158968.1|BJ158968
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|208356336|gb|DC914254.1|DC914254
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162277750|gb|FC453589.1|FC453589
EST:     GCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18364826|gb|BJ196899.1|BJ196899
EST:     GCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162265771|gb|FC443177.1|FC443177
EST:     CTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162246407|gb|FC419943.1|FC419943
EST:     CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162219934|gb|FC396749.1|FC396749
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|208347658|gb|DC912875.1|DC912875
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|67695799|gb|BJ956032.1|BJ956032
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162211762|gb|FC387426.1|FC387426
EST:     GTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18367268|gb|BJ199350.1|BJ199350
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162236409|gb|FC412776.1|FC412776
EST:     CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162246408|gb|FC419944.1|FC419944
EST:     CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18346490|gb|BJ178533.1|BJ178533
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162268991|gb|FC445483.1|FC445483
EST:     TACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|18362029|gb|BJ194096.1|BJ194096
EST:     CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|67572426|gb|BJ945250.1|BJ945250
EST:     GTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: GTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162268992|gb|FC445484.1|FC445484
EST:     TCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|22492606|gb|BU052529.1|BU052529
EST:     TGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|208378252|gb|DC918873.1|DC918873
EST:     CAGCGCCGTTGTGTTT-TCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: CAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
EST: gi|162186776|gb|FC362812.1|FC362812
EST:     TCCCGGTACAGTTAGTTCTACTCCAGCCATGAG                         TAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC
genomic: TCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 60

GTGTACAAAGCCACGACTAGGGTATATCTGAAGCTCTTTCACAGCTCTGCAGCGCCGTTGTGTTTCTCCCGGTACAGTTAGTTCTACTCCAGCCATGAGgttcgtttct ... tcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT
                    agctgac  putative branch site (score: 60)
                                        ttttttc  putative PPT
          tttaatttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagttctgctttggaaatttagttcctgtggtgagttgtttaatggttgttaggtttaatttgtagctgacggacgtggaatgattttttcggacgcagTAAGCTCCAGAGCGATGTCCTCCGGGAGGCCATTACGCAGATCACCACTGCGGCCAAGGAGAAGAACCGGAAGTTCACTGAAACTGTAGAGCTTCAGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT