Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggcgaagacagaccctctggaggtgtgtcggtttgtcaattggattttctttgcttccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC

Basic information

species Physcomitrella patens
transcript PP1S39_422V6.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os05g30530.1 (Oryza sativa), 3'ss of exon 1
-aggcgaagacagaccctctggaggtgtgtcggtttg-tcaattggattttctttgcttccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
    |         |||| |  |  | | ||  || | |   ||  |   | |     |       ||     ||||         |     |  ||   ||||  ||||| | ||||||||| ||||| | || |||||||| || ||||||||||| |||||| | ||||| ||||| 
tttactgtattgcccccttttcatttctctcatttggattggttaaacgctatcaatatgtatttatc--ttgttaaaagaatctccttttctgcttaatagGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G125271_T01 (Zea mays), 3'ss of exon 1
-aggcgaagacagaccctctggaggtgtgtcggtttgtcaattggattttctttgcttccgaccttcggcacttaactatgatgtcacacttctttgg----cagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
  |   | ||   |  |  || |     || |   || | ||  |||     |||||    | ||   |  |||   | ||||  |    || ||||     |||||| | ||  | ||||||||||||||| | || |||||||| | |||||||||||| |||||| | || || || || 
ttgagaaggaatcattccgtgaaatcaggttgcgatgcctat--gataacacttgctgg-aatctgttgtgctt--ttctgatcactgttttttttgcaatccagGCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTGGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA14G06170.1 (Glycine max), 3'ss of exon 1
aggcgaagacagaccctctgga--ggtgtgtcggtttgtcaattggattttctttgcttccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
|  | |          | ||    | | | | |  |||    || |||||| |||  ||  |  |||  ||  | |||| |  ||    |    | |  |||||| |||| |||||||||||||||||  | || ||||| |||| |||||||||||| |||||  ||||||||||||| 
aaactagcgttttgtatatgatttgttctttagacttgctgtttagattttttttatttt-gtgcttgagctttaaacttttgtgct-tatgattgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G05370.1 (Glycine max), 3'ss of exon 1
aggcgaagacagaccc--tctggaggtgtgtcggtttgtcaattggattttctttgctt---ccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
  |  | |          | ||    |   | |  |||  | |     ||| |||  ||     |    |  ||  | ||||   || |   |    | |  |||||  | ||  | ||||||||||||||| | || |||||||| | |||||||||||| |||||  ||||||||||||| 
--gtaatgctgagttttatttgtttattgttagacttgatattgaaggtttttttaattaatttgtgtctgagctttgaacttcaatat---atgattgtaacagGCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G23730.1 (Glycine max), 3'ss of exon 1
aggcgaagacagaccctctggaggtgtgtcggtttgtcaattggattttctttgcttccgaccttcggcacttaactatgatgtcacactt----ctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
   |||          | | | | |   |  | |  ||||  |  ||||  ||  |    |  ||  |   | | || |||  |   | ||     | |  |||||  | ||  ||||||||||| ||||| | || |||||||| | |||||||||||| |||||  ||||||||||||| 
-cccgagttttatttgtttagtgttagatttgatattcaa--gattttttatttttaattaatttttgt-ttgagctttgaacttcaatttatgattgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
aggcgaagacagaccctctggaggtg-tgtcggtttgtcaattggattttctttgctt---ccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
   | |  | ||    |    |  |  |||| |  |  |  || || | | |||| ||     |   ||  |   | |||| |  ||    |   || |  |||||| ||||  | ||||||||| | ||| | || ||||| |||| |||||||||||| |||||  ||||||||||||| 
---ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttgagttttaaactttcgtgct-tatgactgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 2
aggcgaagacagaccctctggaggtgtgtcggtttgtcaattggattttctttgcttccgac--cttcggcacttaactatgatgtcacac--ttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
  |     | | |   | ||||  ||||    ||||| |  ||  |||| | |  |||| ||   ||     || |||| |  |||||      |   |  |||||| | ||  | ||||| ||||||||| | || |||||||||| |||||||||||| |||||| | || |||||||| 
--gtatgaaaatatgatttggaactgtgatt-tttgtaatctgccttttttgtttttccaacatttttattgctgaact-tcttgtcatgtgggtgcattacagGCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359187|gb|DC934690.1|DC934690
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208360509|gb|DC930264.1|DC930264
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162154350|gb|FC330689.1|FC330689
EST:     CGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162278196|gb|FC454431.1|FC454431
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162242260|gb|FC416068.1|FC416068
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162276378|gb|FC452134.1|FC452134
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67718472|gb|BJ968731.1|BJ968731
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67508494|gb|BJ941359.1|BJ941359
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|19785991|gb|BQ040424.1|BQ040424
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|19788282|gb|BQ040749.1|BQ040749
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100442819|gb|BY963314.1|BY963314
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208384703|gb|DC915264.1|DC915264
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100401651|gb|BY954638.1|BY954638
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701936|gb|BJ962169.1|BJ962169
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208372480|gb|DC940769.1|DC940769
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18368491|gb|BJ200576.1|BJ200576
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208387351|gb|DC933102.1|DC933102
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162244481|gb|FC422654.1|FC422654
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162270733|gb|FC446346.1|FC446346
EST:     CGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208375348|gb|DC940458.1|DC940458
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18328286|gb|BJ160290.1|BJ160290
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67717249|gb|BJ967508.1|BJ967508
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67574528|gb|BJ947352.1|BJ947352
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100431604|gb|BY960281.1|BY960281
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67709828|gb|BJ965644.1|BJ965644
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208352124|gb|DC906269.1|DC906269
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67703238|gb|BJ963471.1|BJ963471
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18330600|gb|BJ162606.1|BJ162606
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67716544|gb|BJ966804.1|BJ966804
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18356288|gb|BJ188347.1|BJ188347
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208372338|gb|DC936468.1|DC936468
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162262040|gb|FC436847.1|FC436847
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18371578|gb|BJ203180.1|BJ203180
EST:     ACCGCCATCTCTCGCCTTCGTGCGANTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTANGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208375314|gb|DC940452.1|DC940452
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208388018|gb|DC933138.1|DC933138
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100410121|gb|BY974421.1|BY974421
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67716220|gb|BJ966480.1|BJ966480
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208353141|gb|DC910150.1|DC910150
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67720011|gb|BJ970270.1|BJ970270
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162274815|gb|FC450842.1|FC450842
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208379834|gb|DC911719.1|DC911719
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208363834|gb|DC943291.1|DC943291
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208391309|gb|DC938199.1|DC938199
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208344652|gb|DC905101.1|DC905101
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18373265|gb|BJ204867.1|BJ204867
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208365611|gb|DC935736.1|DC935736
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208393421|gb|DC942505.1|DC942505
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162259066|gb|FC435151.1|FC435151
EST:     CGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: CGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162258802|gb|FC434809.1|FC434809
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67712701|gb|BJ966150.1|BJ966150
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208387833|gb|DC941402.1|DC941402
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701993|gb|BJ962226.1|BJ962226
EST:     ACCGCCATCTCTCGCCCTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100387796|gb|BY970541.1|BY970541
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18327413|gb|BJ159415.1|BJ159415
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67701654|gb|BJ961887.1|BJ961887
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|100427291|gb|BY959073.1|BY959073
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|208374275|gb|DC940660.1|DC940660
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|18350121|gb|BJ182172.1|BJ182172
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162220028|gb|FC395374.1|FC395374
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|162207391|gb|FC383948.1|FC383948
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
EST: gi|67717734|gb|BJ967993.1|BJ967993
EST:     ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATG                         GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG
genomic: ACCGCCATCTCTCGCCTTCGTGCGAGTTCCAGCTCCGCTTCGCCACCATGgtacaagcca ... tctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttgcttccgaccttcggcacttaactatgatgtcacacttctttggcagGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC
                        acttaac  putative branch site (score: 3)
                                         cacttcttt  putative PPT
                          ttaactat  TA-rich tract